Gm20629 Gene Detail

Summary

• Symbol
  Gm20629
• Name
  predicted gene 20629

• Feature Type
  lncRNA gene
• IDs
  MGI:5313076
  NCBI Gene: 102637859
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:109091780-109097281 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.24 cM

Strain
Comparison

• SNPs within 2kb
  319 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313076	lncRNA gene	Chr5:108997647-109097281 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004134	antisense lncRNA gene	Chr5:110980524-111148294 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0004094	antisense lncRNA gene	Chr5:110166785-110297952 (+)
BALB/cJ	MGP_BALBcJ_G0004100	antisense lncRNA gene	Chr5:107814046-108030039 (+)
C3H/HeJ	MGP_C3HHeJ_G0004048	antisense lncRNA gene	Chr5:110665036-110771953 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0004042	antisense lncRNA gene	Chr5:119510037-119621957 (+)
DBA/2J	MGP_DBA2J_G0004057	antisense lncRNA gene	Chr5:106838199-106949666 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0004245	antisense lncRNA gene	Chr5:109698988-109812285 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004046	antisense lncRNA gene	Chr5:109993807-110148667 (+)

Homology

• Gene Tree
  Gm20629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20629
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000093479 (Evidence)
• NCBI Gene
  102637859

Representative Sequences			Length	Strain/Species
genomic	102637859	NCBI Gene Model | MGI Sequence Detail	5502	C57BL/6J
transcript	XR_001784925	RefSeq | MGI Sequence Detail	447	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17