Gm20633 Gene Detail

Summary

• Symbol
  Gm20633
• Name
  predicted gene 20633

• Feature Type
  lncRNA gene
• IDs
  MGI:5313080
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:96150866-96153696 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.69 cM

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313080	lncRNA gene	Chr3:96150866-96153696 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003793	antisense lncRNA gene	Chr3:97050302-97053214 (-)
A/J	MGP_AJ_G0003773	antisense lncRNA gene	Chr3:94000306-94008707 (+)
AKR/J	MGP_AKRJ_G0003750	antisense lncRNA gene	Chr3:96210421-96213237 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0003708	antisense lncRNA gene	Chr3:96493835-96498041 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0003735	antisense lncRNA gene	Chr3:91367214-91370048 (+)
LP/J	MGP_LPJ_G0003795	antisense lncRNA gene	Chr3:98360607-98366700 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003722	antisense lncRNA gene	Chr3:110388049-110392189 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003903	antisense lncRNA gene	Chr3:95842260-95847473 (-)
PWK/PhJ	MGP_PWKPhJ_G0003628	antisense lncRNA gene	Chr3:93197830-93201448 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003572	antisense lncRNA gene	Chr3:94144551-94149095 (-)
WSB/EiJ	MGP_WSBEiJ_G0003708	antisense lncRNA gene	Chr3:96235766-96240014 (+)

Homology

• Gene Tree
  Gm20633
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm20633
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000093553 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093553	Ensembl Gene Model | MGI Sequence Detail	2831	C57BL/6J
transcript	ENSMUST00000176742	Ensembl | MGI Sequence Detail	2831	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20633:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34601	Chr3:96152622-96152634 (-)	1,068 bp
Tssr34600	Chr3:96152533-96152538 (-)	1,160 bp