Gm20638 Gene Detail

Summary

• Symbol
  Gm20638
• Name
  predicted gene 20638

• Feature Type
  lncRNA gene
• IDs
  MGI:5313085
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:109503511-109504438 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.63 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313085	lncRNA gene	Chr2:109503511-109504438 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015452	unclassified non-coding RNA gene	Chr2:112012246-112013173 (+)
A/J	MGP_AJ_G0015428	unclassified non-coding RNA gene	Chr2:107323354-107324281 (+)
AKR/J	MGP_AKRJ_G0015392	unclassified non-coding RNA gene	Chr2:110338635-110339562 (+)
BALB/cJ	MGP_BALBcJ_G0015391	unclassified non-coding RNA gene	Chr2:107595522-107596449 (+)
C3H/HeJ	MGP_C3HHeJ_G0015214	unclassified non-coding RNA gene	Chr2:110627682-110628610 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015845	unclassified non-coding RNA gene	Chr2:115667879-115668806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013584	unclassified non-coding RNA gene	Chr2:102884584-102885509 (+)
CAST/EiJ	MGP_CASTEiJ_G0014766	unclassified non-coding RNA gene	Chr2:111129394-111130321 (+)
CBA/J	MGP_CBAJ_G0015195	unclassified non-coding RNA gene	Chr2:119680605-119681532 (+)
DBA/2J	MGP_DBA2J_G0015289	unclassified non-coding RNA gene	Chr2:106825851-106826778 (+)
FVB/NJ	MGP_FVBNJ_G0015296	unclassified non-coding RNA gene	Chr2:105741809-105742736 (+)
LP/J	MGP_LPJ_G0015367	unclassified non-coding RNA gene	Chr2:112195666-112196593 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015320	unclassified non-coding RNA gene	Chr2:123798098-123799025 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015885	unclassified non-coding RNA gene	Chr2:110487791-110488718 (+)
PWK/PhJ	MGP_PWKPhJ_G0014554	unclassified non-coding RNA gene	Chr2:106461900-106462828 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014342	unclassified non-coding RNA gene	Chr2:109709955-109710890 (+)
WSB/EiJ	MGP_WSBEiJ_G0014873	unclassified non-coding RNA gene	Chr2:111242689-111243616 (+)

Homology

• Gene Tree
  Gm20638
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20638
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093410 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093410	Ensembl Gene Model | MGI Sequence Detail	928	C57BL/6J
transcript	ENSMUST00000175796	Ensembl | MGI Sequence Detail	550	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17