Gm20641 Gene Detail

Summary

• Symbol
  Gm20641
• Name
  predicted gene 20641

• Feature Type
  lncRNA gene
• IDs
  MGI:5313088
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:38244006-38254268 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.18 cM

Strain
Comparison

• SNPs within 2kb
  500 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313088	lncRNA gene	Chr14:38244006-38254268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003236	antisense lncRNA gene	Chr14:32064638-32074876 (+)
A/J	MGP_AJ_G0003212	antisense lncRNA gene	Chr14:30765106-30775263 (+)
AKR/J	MGP_AKRJ_G0003195	antisense lncRNA gene	Chr14:32105531-32117564 (+)
BALB/cJ	MGP_BALBcJ_G0003199	antisense lncRNA gene	Chr14:30997014-31007104 (+)
C3H/HeJ	MGP_C3HHeJ_G0003155	antisense lncRNA gene	Chr14:32024395-32035168 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003342	antisense lncRNA gene	Chr14:33234827-33251046 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002868	antisense lncRNA gene	Chr14:30597459-30607609 (+)
CAST/EiJ	MGP_CASTEiJ_G0003121	antisense lncRNA gene	Chr14:31866683-31875777 (+)
CBA/J	MGP_CBAJ_G0003152	antisense lncRNA gene	Chr14:34474459-34485673 (+)
DBA/2J	MGP_DBA2J_G0003157	antisense lncRNA gene	Chr14:30781444-30791629 (+)
FVB/NJ	MGP_FVBNJ_G0003175	antisense lncRNA gene	Chr14:30742896-30753000 (+)
LP/J	MGP_LPJ_G0003233	antisense lncRNA gene	Chr14:32311185-32321226 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003166	antisense lncRNA gene	Chr14:33809101-33819192 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003343	antisense lncRNA gene	Chr14:31938185-31948288 (+)
PWK/PhJ	MGP_PWKPhJ_G0003079	antisense lncRNA gene	Chr14:30301883-30312181 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003025	antisense lncRNA gene	Chr14:31532102-31541207 (+)
WSB/EiJ	MGP_WSBEiJ_G0003155	antisense lncRNA gene	Chr14:32009754-32021630 (+)

Homology

• Gene Tree
  Gm20641
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093556 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093556	Ensembl Gene Model | MGI Sequence Detail	10263	C57BL/6J
transcript	ENSMUST00000176069	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;