Gm20644 Gene Detail

Summary

• Symbol
  Gm20644
• Name
  predicted gene 20644

• Feature Type
  lncRNA gene
• IDs
  MGI:5313091
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:98176208-98178270 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.75 cM

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313091	lncRNA gene	Chr11:98176208-98178270 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037103	sense overlapping lncRNA gene	Chr11:100813782-100815828 (+)
A/J	MGP_AJ_G0037090	sense overlapping lncRNA gene	Chr11:96632610-96634655 (+)
AKR/J	MGP_AKRJ_G0037038	sense overlapping lncRNA gene	Chr11:99622225-99624216 (+)
BALB/cJ	MGP_BALBcJ_G0037081	sense overlapping lncRNA gene	Chr11:97122749-97124808 (+)
C3H/HeJ	MGP_C3HHeJ_G0036768	sense overlapping lncRNA gene	Chr11:99749928-99751919 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037595	sense overlapping lncRNA gene	Chr11:103896179-103898153 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034638	sense overlapping lncRNA gene	Chr11:94071375-94073425 (+)
CAST/EiJ	MGP_CASTEiJ_G0035955	sense overlapping lncRNA gene	Chr11:100625215-100627248 (+)
CBA/J	MGP_CBAJ_G0036743	sense overlapping lncRNA gene	Chr11:108210760-108212751 (+)
DBA/2J	MGP_DBA2J_G0036918	sense overlapping lncRNA gene	Chr11:96172353-96174344 (+)
FVB/NJ	MGP_FVBNJ_G0036868	sense overlapping lncRNA gene	Chr11:95679199-95681227 (+)
LP/J	MGP_LPJ_G0036965	sense overlapping lncRNA gene	Chr11:101290254-101292301 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036876	sense overlapping lncRNA gene	Chr11:108013147-108015193 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037712	sense overlapping lncRNA gene	Chr11:99950212-99952263 (+)
PWK/PhJ	MGP_PWKPhJ_G0035649	sense overlapping lncRNA gene	Chr11:97177119-97179092 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035457	sense overlapping lncRNA gene	Chr11:99658075-99660098 (+)
WSB/EiJ	MGP_WSBEiJ_G0036157	sense overlapping lncRNA gene	Chr11:99855232-99857280 (+)

Homology

• Gene Tree
  Gm20644
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20644
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093673 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093673	Ensembl Gene Model | MGI Sequence Detail	2063	C57BL/6J
transcript	ENSMUST00000176721	Ensembl | MGI Sequence Detail	2063	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52