Gm20647 Gene Detail

Summary

• Symbol
  Gm20647
• Name
  predicted gene 20647

• Feature Type
  lncRNA gene
• IDs
  MGI:5313094
  NCBI Gene: 102637215
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:72473697-72525391 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 38.44 cM

Strain
Comparison

• SNPs within 2kb
  1574 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313094	lncRNA gene	Chr5:72473697-72525391 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004098	antisense lncRNA gene	Chr5:72228604-72282313 (+)
A/J	MGP_AJ_G0004079	antisense lncRNA gene	Chr5:69531544-69583437 (+)
AKR/J	MGP_AKRJ_G0004057	antisense lncRNA gene	Chr5:71759727-71810704 (+)
BALB/cJ	MGP_BALBcJ_G0004065	antisense lncRNA gene	Chr5:70198832-70251553 (+)
C3H/HeJ	MGP_C3HHeJ_G0004011	antisense lncRNA gene	Chr5:72121481-72170479 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004213	antisense lncRNA gene	Chr5:75219254-75280277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003690	antisense lncRNA gene	Chr5:65260186-65308510 (+)
CAST/EiJ	MGP_CASTEiJ_G0003974	antisense lncRNA gene	Chr5:71235943-71286463 (+)
CBA/J	MGP_CBAJ_G0004005	antisense lncRNA gene	Chr5:77619339-77677491 (+)
DBA/2J	MGP_DBA2J_G0004020	antisense lncRNA gene	Chr5:69589928-69637021 (+)
FVB/NJ	MGP_FVBNJ_G0004039	antisense lncRNA gene	Chr5:68767911-68818181 (+)
LP/J	MGP_LPJ_G0004100	antisense lncRNA gene	Chr5:72715761-72763884 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004028	antisense lncRNA gene	Chr5:81011245-81065601 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004209	antisense lncRNA gene	Chr5:71342968-71399912 (+)
PWK/PhJ	MGP_PWKPhJ_G0003927	antisense lncRNA gene	Chr5:68556814-68604252 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003872	antisense lncRNA gene	Chr5:70716989-70770139 (+)
WSB/EiJ	MGP_WSBEiJ_G0004009	antisense lncRNA gene	Chr5:71594251-71649631 (+)

Homology

• Gene Tree
  Gm20647
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm20647
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093400 (Evidence)
• NCBI Gene
  102637215

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093400	Ensembl Gene Model | MGI Sequence Detail	51695	C57BL/6J
transcript	ENSMUST00000176396	Ensembl | MGI Sequence Detail	857	Not Applicable

References

• Summaries
  All 21

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707