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Ly6l Gene Detail
Summary
  • Symbol
    Ly6l
  • Name
    lymphocyte antigen 6 family member L
  • Synonyms
    Gm20654
  • Feature Type
    protein coding gene
  • IDs
    MGI:5313101
    NCBI Gene: 102637705
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr15:75321306-75323255 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.37 cM
Strain
Comparison
more
  • SNPs within 2kb
    239 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5313101
 protein coding gene Chr15:75321301-75323662 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021952
 protein coding gene Chr15:75385344-75529805 (+)
A/J MGP_AJ_G0021910
 protein coding gene Chr15:72725706-72727654 (+)
AKR/J MGP_AKRJ_G0025278
 protein coding gene Chr2:6780813-6782762 (-)
BALB/cJ MGP_BALBcJ_G0021919
 protein coding gene Chr15:72659185-72729110 (+)
C3H/HeJ MGP_C3HHeJ_G0021691
 protein coding gene Chr15:74687826-74828387 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022359
 protein coding gene Chr15:78250473-78252422 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0021210
 protein coding gene Chr15:75511772-75513722 (+)
CBA/J MGP_CBAJ_G0021658
 protein coding gene Chr15:80736750-80816125 (+)
DBA/2J MGP_DBA2J_G0021783
 protein coding gene Chr15:72239317-72313375 (+)
FVB/NJ MGP_FVBNJ_G0021764
 protein coding gene Chr15:71253721-71367293 (+)
LP/J MGP_LPJ_G0021854
 protein coding gene Chr15:75458345-75564702 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021788
 protein coding gene Chr15:86062763-86177312 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0020951
 protein coding gene Chr15:72367571-72369557 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020790
 protein coding gene Chr15:74646179-74648158 (+)
WSB/EiJ MGP_WSBEiJ_G0021262
 protein coding gene Chr15:74977359-75079197 (+)



Homology
more
  • Human Ortholog
    LY6L, lymphocyte antigen 6 family member L
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LY6L, lymphocyte antigen 6 family member L
  • Links
    NCBI Gene ID: 101928108
    UniProt: H3BQJ8

  • Chr Location
    chr8:143080630-143083486 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000093626 Ensembl Gene Model | MGI Sequence Detail 1950 C57BL/6J ±  kb
    transcript ENSMUST00000177479 Ensembl | MGI Sequence Detail 430 Not Applicable  
    polypeptide ENSMUSP00000134982 Ensembl | MGI Sequence Detail 140 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    References
    more
    • Summaries
      All 37
      Diseases 1
      Gene Ontology 3
      Phenotypes 26
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory