Gm20662 Gene Detail

Summary

• Symbol
  Gm20662
• Name
  predicted gene 20662

• Feature Type
  protein coding gene
• IDs
  MGI:5313109
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:107873548-107922469 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 59.07 cM

Strain
Comparison

• SNPs within 2kb
  843 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313109	protein coding gene	Chr9:107873548-107922469 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035280	protein coding gene	Chr9:109912637-109969877 (+)
A/J	MGP_AJ_G0035259	protein coding gene	Chr9:105900411-105950390 (+)
AKR/J	MGP_AKRJ_G0035191	protein coding gene	Chr9:108541330-108593752 (+)
BALB/cJ	MGP_BALBcJ_G0035253	protein coding gene	Chr9:105572330-105646765 (+)
C3H/HeJ	MGP_C3HHeJ_G0034963	protein coding gene	Chr9:108938542-108992417 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035773	protein coding gene	Chr9:112886498-112943939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032671	protein coding gene	Chr9:103333290-103384900 (+)
CAST/EiJ	MGP_CASTEiJ_G0034274	protein coding gene	Chr9:108896171-108951244 (+)
CBA/J	MGP_CBAJ_G0034931	protein coding gene	Chr9:116882983-116941509 (+)
DBA/2J	MGP_DBA2J_G0035092	protein coding gene	Chr9:105357010-105405512 (+)
FVB/NJ	MGP_FVBNJ_G0035040	protein coding gene	Chr9:104120743-104173105 (+)
LP/J	MGP_LPJ_G0035168	protein coding gene	Chr9:110107095-110160916 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035079	protein coding gene	Chr9:118476568-118528379 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035794	protein coding gene	Chr9:108819724-108873049 (+)
PWK/PhJ	MGP_PWKPhJ_G0033981	protein coding gene	Chr9:105677344-105727312 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033816	protein coding gene	Chr9:108884250-108933757 (+)
WSB/EiJ	MGP_WSBEiJ_G0034395	protein coding gene	Chr9:108699005-108751469 (+)

Homology

• Gene Tree
  Gm20662
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  2

• Ensembl
  ENSMUSG00000093456 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093456	Ensembl Gene Model | MGI Sequence Detail	48922	C57BL/6J
transcript	ENSMUST00000176356	Ensembl | MGI Sequence Detail	601	Not Applicable
polypeptide	ENSMUSP00000135269	Ensembl | MGI Sequence Detail	40	Not Applicable

Protein
Information

• UniProt
  2 Sequences

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm20662:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87051	Chr9:107872927-107872937 (+)	-616 bp
Tssr87052	Chr9:107872938-107872989 (+)	-584 bp
Tssr87053	Chr9:107875186-107875198 (+)	1,644 bp
Tssr87054	Chr9:107875205-107875225 (+)	1,667 bp