Gm20673 Pseudogene Detail

Summary

• Symbol
  Gm20673
• Name
  predicted gene 20673

• Feature Type
  pseudogene
• IDs
  MGI:5313120
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:58438092-58438521 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 27.82 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313120	pseudogene	Chr6:58438092-58438521 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013472	pseudogene	Chr6:58060451-58060880 (+)
A/J	MGP_AJ_G0013457	pseudogene	Chr6:55507710-55508139 (+)
AKR/J	MGP_AKRJ_G0013422	pseudogene	Chr6:57340541-57340970 (+)
BALB/cJ	MGP_BALBcJ_G0013436	pseudogene	Chr6:55799048-55799477 (+)
C3H/HeJ	MGP_C3HHeJ_G0013285	pseudogene	Chr6:57323331-57323760 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013822	pseudogene	Chr6:59359819-59360248 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012992	pseudogene	Chr6:56962270-56962699 (+)
CBA/J	MGP_CBAJ_G0013254	pseudogene	Chr6:61842317-61842746 (+)
DBA/2J	MGP_DBA2J_G0013338	pseudogene	Chr6:55232617-55233046 (+)
FVB/NJ	MGP_FVBNJ_G0013335	pseudogene	Chr6:54810518-54810947 (+)
LP/J	MGP_LPJ_G0013408	pseudogene	Chr6:57990809-57991238 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013355	pseudogene	Chr6:64455535-64455964 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013819	pseudogene	Chr6:57216599-57217028 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012583	pseudogene	Chr6:56508780-56509202 (-)
WSB/EiJ	MGP_WSBEiJ_G0013037	pseudogene	Chr6:57453906-57454335 (+)

Homology

• Gene Tree
  Gm20673
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000093747 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093747	Ensembl Gene Model | MGI Sequence Detail	430	C57BL/6J
transcript	ENSMUST00000177167	Ensembl | MGI Sequence Detail	430	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;