Gm20683 Gene Detail

Summary

• Symbol
  Gm20683
• Name
  predicted gene 20683

• Feature Type
  protein coding gene
• IDs
  MGI:5313130
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:26053439-26060737 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.93 cM

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313130	protein coding gene	Chr17:26053439-26060737 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023374	protein coding gene	Chr17:24931798-24939096 (-)
A/J	MGP_AJ_G0023333	protein coding gene	Chr17:24207368-24214664 (-)
AKR/J	MGP_AKRJ_G0023299	protein coding gene	Chr17:24312931-24320234 (-)
BALB/cJ	MGP_BALBcJ_G0023338	protein coding gene	Chr17:24435441-24442740 (-)
C3H/HeJ	MGP_C3HHeJ_G0023098	protein coding gene	Chr17:24696540-24703833 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023780	protein coding gene	Chr17:25984855-25992196 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021256	protein coding gene	Chr17:21668915-21676111 (-)
CAST/EiJ	MGP_CASTEiJ_G0022600	protein coding gene	Chr17:24581882-24589166 (-)
CBA/J	MGP_CBAJ_G0023073	protein coding gene	Chr17:26896535-26903828 (-)
DBA/2J	MGP_DBA2J_G0023203	protein coding gene	Chr17:23810044-23817340 (-)
FVB/NJ	MGP_FVBNJ_G0023173	protein coding gene	Chr17:23550194-23557757 (-)
LP/J	MGP_LPJ_G0023280	protein coding gene	Chr17:25232455-25239753 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023192	protein coding gene	Chr17:26508890-26516186 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023820	protein coding gene	Chr17:24632456-24639751 (-)
PWK/PhJ	MGP_PWKPhJ_G0022349	protein coding gene	Chr17:22571354-22578788 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0022167	protein coding gene	Chr17:22706235-22713531 (-)
WSB/EiJ	MGP_WSBEiJ_G0022663	protein coding gene	Chr17:24683157-24690447 (-)

Homology

• Gene Tree
  Gm20683
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm20683
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000093593 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093593	Ensembl Gene Model | MGI Sequence Detail	7299	C57BL/6J
transcript	ENSMUST00000176751	Ensembl | MGI Sequence Detail	2790	Not Applicable
polypeptide	ENSMUSP00000135410	Ensembl | MGI Sequence Detail	410	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR018247 EF-Hand 1, calcium-binding site
  IPR013567 EF hand associated, type-2
  IPR002048 EF-hand domain
  IPR011992 EF-hand domain pair
  IPR020860 MIRO domain
  IPR013566 Mitochondrial Rho GTPase 1/3, EF hand associated, type-1
  IPR027417 P-loop containing nucleoside triphosphate hydrolase

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044