Gm20686 Gene Detail

Summary

• Symbol
  Gm20686
• Name
  predicted gene 20686

• Feature Type
  lncRNA gene
• IDs
  MGI:5313133
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:109644896-109648506 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 56.19 cM

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313133	lncRNA gene	Chr8:109644896-109648506 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004581	antisense lncRNA gene	Chr8:111470328-111475093 (-)
A/J	MGP_AJ_G0004561	antisense lncRNA gene	Chr8:106958141-106961686 (-)
AKR/J	MGP_AKRJ_G0004545	antisense lncRNA gene	Chr8:110103325-110108300 (-)
BALB/cJ	MGP_BALBcJ_G0004546	antisense lncRNA gene	Chr8:107169809-107173395 (-)
C3H/HeJ	MGP_C3HHeJ_G0004495	antisense lncRNA gene	Chr8:110816046-110819587 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004695	antisense lncRNA gene	Chr8:115424243-115427853 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004146	antisense lncRNA gene	Chr8:100018049-100021499 (-)
CAST/EiJ	MGP_CASTEiJ_G0004454	antisense lncRNA gene	Chr8:110399548-110403252 (-)
CBA/J	MGP_CBAJ_G0004489	antisense lncRNA gene	Chr8:119261947-119268094 (-)
DBA/2J	MGP_DBA2J_G0004504	antisense lncRNA gene	Chr8:106295536-106299113 (-)
FVB/NJ	MGP_FVBNJ_G0004521	antisense lncRNA gene	Chr8:105235609-105239205 (-)
LP/J	MGP_LPJ_G0004585	antisense lncRNA gene	Chr8:111650305-111655592 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004510	antisense lncRNA gene	Chr8:122338410-122342010 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004695	antisense lncRNA gene	Chr8:110051954-110056625 (-)
PWK/PhJ	MGP_PWKPhJ_G0004406	antisense lncRNA gene	Chr8:105733291-105736920 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004347	antisense lncRNA gene	Chr8:108774942-108778468 (-)
WSB/EiJ	MGP_WSBEiJ_G0004494	antisense lncRNA gene	Chr8:110730157-110736578 (-)

Homology

• Gene Tree
  Gm20686
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093697 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093697	Ensembl Gene Model | MGI Sequence Detail	3611	C57BL/6J
transcript	ENSMUST00000175846	Ensembl | MGI Sequence Detail	535	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;