Gm20700 Gene Detail

Summary

• Symbol
  Gm20700
• Name
  predicted gene 20700

• Feature Type
  lncRNA gene
• IDs
  MGI:5313147
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:48748231-48757336 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 26.36 cM

Strain
Comparison

• SNPs within 2kb
  392 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313147	lncRNA gene	Chr5:48748231-48757336 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004079	antisense lncRNA gene	Chr5:47397363-47406472 (+)
A/J	MGP_AJ_G0004060	antisense lncRNA gene	Chr5:45768384-45777484 (+)
AKR/J	MGP_AKRJ_G0004038	antisense lncRNA gene	Chr5:47319567-47328673 (+)
BALB/cJ	MGP_BALBcJ_G0004046	antisense lncRNA gene	Chr5:46260743-46269831 (+)
C3H/HeJ	MGP_C3HHeJ_G0003992	antisense lncRNA gene	Chr5:47485842-47494947 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004195	antisense lncRNA gene	Chr5:49498250-49510727 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003956	antisense lncRNA gene	Chr5:46460294-46469431 (+)
CBA/J	MGP_CBAJ_G0003986	antisense lncRNA gene	Chr5:50932154-50942215 (+)
DBA/2J	MGP_DBA2J_G0004001	antisense lncRNA gene	Chr5:45840614-45849868 (+)
FVB/NJ	MGP_FVBNJ_G0004020	antisense lncRNA gene	Chr5:45219502-45228600 (+)
LP/J	MGP_LPJ_G0004081	antisense lncRNA gene	Chr5:47862652-47871666 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004009	antisense lncRNA gene	Chr5:51972697-51985059 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004190	antisense lncRNA gene	Chr5:46866585-46876079 (+)
PWK/PhJ	MGP_PWKPhJ_G0003909	antisense lncRNA gene	Chr5:44927144-44936543 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003854	antisense lncRNA gene	Chr5:46247445-46256767 (+)
WSB/EiJ	MGP_WSBEiJ_G0003991	antisense lncRNA gene	Chr5:46921175-46931309 (+)

Homology

• Gene Tree
  Gm20700
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm20700
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000093502 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093502	Ensembl Gene Model | MGI Sequence Detail	9106	C57BL/6J
transcript	ENSMUST00000176749	Ensembl | MGI Sequence Detail	2206	Not Applicable

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707