Gm21850 Pseudogene Detail

Summary

• Symbol
  Gm21850
• Name
  predicted gene, 21850

• Feature Type
  pseudogene
• IDs
  MGI:5434014
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:153894189-153898559 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  254 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434014	pseudogene	Chr2:153894189-153898559 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040281	pseudogene	Chr2:158760892-158765254 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0040197	pseudogene	Chr2:156856113-156860483 (+)
BALB/cJ	MGP_BALBcJ_G0040262	pseudogene	Chr2:152712074-152716423 (+)
C3H/HeJ	MGP_C3HHeJ_G0039897	pseudogene	Chr2:157224965-157229314 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040854	pseudogene	Chr2:163382831-163387201 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038980	pseudogene	Chr2:157495484-157499837 (+)
CBA/J	MGP_CBAJ_G0039865	pseudogene	Chr2:169382946-169387295 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040020	pseudogene	Chr2:150046262-150050631 (+)
LP/J	MGP_LPJ_G0040111	pseudogene	Chr2:158871832-158876194 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040953	pseudogene	Chr2:156738358-156742727 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038370	pseudogene	Chr2:155599313-155603600 (+)
WSB/EiJ	MGP_WSBEiJ_G0039204	pseudogene	Chr2:157651308-157655665 (+)

Homology

• Gene Tree
  Gm21850
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000096084 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096084	Ensembl Gene Model | MGI Sequence Detail	4371	C57BL/6J
transcript	ENSMUST00000179792	Ensembl | MGI Sequence Detail	359	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;