Ankrd40cl Gene Detail

Summary

• Symbol
  Ankrd40cl
• Name
  ANKRD40 C-terminal like
• Synonyms
  Gm21885

• Feature Type
  protein coding gene
• IDs
  MGI:5434049
  NCBI Gene: 102639132
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:94172699-94177079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  226 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434049	protein coding gene	Chr11:94172665-94177086 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018952	protein coding gene	Chr11:96353063-96357089 (+)
A/J	MGP_AJ_G0018920	protein coding gene	Chr11:92510256-92514439 (+)
AKR/J	MGP_AKRJ_G0018890	protein coding gene	Chr11:95383959-95388142 (+)
BALB/cJ	MGP_BALBcJ_G0018893	protein coding gene	Chr11:92952528-92956552 (+)
C3H/HeJ	MGP_C3HHeJ_G0018707	protein coding gene	Chr11:95468145-95472328 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019345	protein coding gene	Chr11:99352084-99356124 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016976	protein coding gene	Chr11:90007304-90013465 (+)
CAST/EiJ	MGP_CASTEiJ_G0018262	protein coding gene	Chr11:96173155-96177184 (+)
CBA/J	MGP_CBAJ_G0018678	protein coding gene	Chr11:103477870-103482053 (+)
DBA/2J	MGP_DBA2J_G0018786	protein coding gene	Chr11:92085868-92089905 (+)
FVB/NJ	MGP_FVBNJ_G0018775	protein coding gene	Chr11:91504771-91508795 (+)
LP/J	MGP_LPJ_G0018856	protein coding gene	Chr11:96901629-96905660 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018802	protein coding gene	Chr11:103519804-103523832 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019385	protein coding gene	Chr11:95605365-95611243 (+)
PWK/PhJ	MGP_PWKPhJ_G0018032	protein coding gene	Chr11:93013444-93017756 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017822	protein coding gene	Chr11:95273727-95277733 (+)
WSB/EiJ	MGP_WSBEiJ_G0018311	protein coding gene	Chr11:95486836-95490866 (+)

Homology

• Human Ortholog
  ANKRD40CL, ANKRD40 C-terminal like

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ANKRD40CL, ANKRD40 C-terminal like
  
• Synonyms
  C17orf73, LINC00483
• Links
  HGNC:26080

  NCBI Gene ID: 55018

  UniProt: Q53H64

  
  
• Chr Location
  17q21.33; chr17:50761029-50767557 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ankrd40cl stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: ANKRD40CL
• Gene Tree
  Ankrd40cl
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  3 involving Ankrd40cl
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000094091 (Evidence)
• NCBI Gene
  102639132

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094091	Ensembl Gene Model | MGI Sequence Detail	4381	C57BL/6J
transcript	ENSMUST00000208510	Ensembl | MGI Sequence Detail	775	Not Applicable
polypeptide	ENSMUSP00000153501	Ensembl | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR039195 Ankyrin repeat domain-containing protein 40

Other
Accession IDs

MGI:6723903

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Ankrd40cl:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104188	Chr11:94172657-94172691 (+)	-25 bp