Gm20740 Gene Detail

Summary

• Symbol
  Gm20740
• Name
  predicted gene, 20740

• Feature Type
  lncRNA gene
• IDs
  MGI:5434096
  NCBI Gene: 432958
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:63286246-63351457 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1730 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434096	lncRNA gene	Chr15:63286246-63351457 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  3
• Radiation induced
  1
• Transposon induced
  10
• Genomic Mutations
  14 involving Gm20740
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  432958

Representative Sequences			Length	Strain/Species
genomic	432958	NCBI Gene Model | MGI Sequence Detail	65212	C57BL/6J
transcript	NR_045279	RefSeq | MGI Sequence Detail	632	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 27

  Phenotypes 23
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm20740:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134496	Chr15:63351510-63351519 (-)	-58 bp
Tssr134495	Chr15:63351471-63351495 (-)	-26 bp
Tssr134494	Chr15:63351392-63351403 (-)	59 bp
Tssr134493	Chr15:63342742-63342746 (-)	8,713 bp