Gm20754 Gene Detail

Summary

• Symbol
  Gm20754
• Name
  predicted gene, 20754

• Feature Type
  lncRNA gene
• IDs
  MGI:5434110
  NCBI Gene: 626082
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:72973684-73502163 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434110	lncRNA gene	Chr3:72973623-73502163 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006207	lincRNA gene	Chr3:72470004-73005193 (+)
A/J	MGP_AJ_G0006199	lincRNA gene	Chr3:70258115-70787074 (+)
AKR/J	MGP_AKRJ_G0006175	lincRNA gene	Chr3:71841309-72373191 (+)
BALB/cJ	MGP_BALBcJ_G0006175	lincRNA gene	Chr3:70184896-70720139 (+)
C3H/HeJ	MGP_C3HHeJ_G0006125	lincRNA gene	Chr3:72107010-72654364 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006338	lincRNA gene	Chr3:75346952-75915722 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005646	lincRNA gene	Chr3:66287820-66764215 (+)
CAST/EiJ	MGP_CASTEiJ_G0006059	lincRNA gene	Chr3:72050019-72588698 (+)
CBA/J	MGP_CBAJ_G0006110	lincRNA gene	Chr3:77654530-78244546 (+)
DBA/2J	MGP_DBA2J_G0006129	lincRNA gene	Chr3:69761861-70311176 (+)
FVB/NJ	MGP_FVBNJ_G0006153	lincRNA gene	Chr3:68283224-68784932 (+)
LP/J	MGP_LPJ_G0006212	lincRNA gene	Chr3:73433026-73995194 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006143	lincRNA gene	Chr3:82907304-83655560 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006342	lincRNA gene	Chr3:71643935-72162232 (+)
PWK/PhJ	MGP_PWKPhJ_G0006004	lincRNA gene	Chr3:69543959-70060515 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005912	lincRNA gene	Chr3:70803651-71330583 (+)
WSB/EiJ	MGP_WSBEiJ_G0006106	lincRNA gene	Chr3:71845252-72409931 (+)

Homology

• Gene Tree
  Gm20754
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20754
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000103428 (Evidence)
• NCBI Gene
  626082

Representative Sequences			Length	Strain/Species
genomic	626082	NCBI Gene Model | MGI Sequence Detail	528480	C57BL/6J
transcript	NR_040557	RefSeq | MGI Sequence Detail	1357	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:326360 Schneider MF, et al., LncRNA RUS shapes the gene expression program towards neurogenesis. Life Sci Alliance. 2022 Oct;5(10):e202201504

TSS for Gm20754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29555	Chr3:72973629-72973662 (+)	-38 bp
Tssr29556	Chr3:72973665-72973677 (+)	-13 bp
Tssr29557	Chr3:72973678-72973692 (+)	1 bp
Tssr29558	Chr3:73029197-73029201 (+)	55,515 bp
Tssr29559	Chr3:73217946-73217947 (+)	244,263 bp