Gm20772 Gene Detail

Summary

• Symbol
  Gm20772
• Name
  predicted gene, 20772

• Feature Type
  protein coding gene
• IDs
  MGI:5434128
  NCBI Gene: 665276
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrY:17876259-17877053 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome Y, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434128	protein coding gene	ChrY:17874741-17877179 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• MGI Vertebrate Homology
  Gm20772 stringent orthology
  1 mouse;3 rat
  
• Gene Tree
  Gm20772
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm20772
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000102739 (Evidence)
• NCBI Gene
  665276

Representative Sequences			Length	Strain/Species
genomic	665276	NCBI Gene Model | MGI Sequence Detail	795	C57BL/6J
transcript	XM_011251051	RefSeq | MGI Sequence Detail	795	C57BL/6J
polypeptide	Q3TTD8	UniProt | EBI | MGI Sequence Detail	232	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR042567 Spindlin/spermiogenesis-specific domain superfamily
  IPR003671 Spindlin/spermiogenesis-specific protein

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:249943 MacBride MM, et al., Mild reproductive impact of a Y chromosome deletion on a C57BL/6J substrain. Mamm Genome. 2017 Jun;28(5-6):155-165
• Latest
  J:250379 Fischer M, et al., Large deletion on the Y-chromosome long arm (Yq) of C57BL/6JBomTac inbred mice. Mamm Genome. 2017 Feb;28(1-2):31-37