Gm21221 Gene Detail

Summary

• Symbol
  Gm21221
• Name
  predicted gene, 21221

• Feature Type
  lncRNA gene
• IDs
  MGI:5434576
  NCBI Gene: 100861794
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:149725455-149735216 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434576	lncRNA gene	Chr5:149725455-149735216 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006879	lincRNA gene	Chr5:155681387-155691125 (-)
A/J	MGP_AJ_G0006873	lincRNA gene	Chr5:149023937-149033681 (-)
AKR/J	MGP_AKRJ_G0006843	lincRNA gene	Chr5:153621541-153632496 (-)
BALB/cJ	MGP_BALBcJ_G0006849	lincRNA gene	Chr5:150280895-150290638 (-)
C3H/HeJ	MGP_C3HHeJ_G0006794	lincRNA gene	Chr5:154611472-154621846 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007014	lincRNA gene	Chr5:161377964-161388045 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006264	lincRNA gene	Chr5:143364480-143374250 (-)
CAST/EiJ	MGP_CASTEiJ_G0006713	lincRNA gene	Chr5:154247499-154257242 (-)
CBA/J	MGP_CBAJ_G0006776	lincRNA gene	Chr5:168187224-168196975 (-)
DBA/2J	MGP_DBA2J_G0006796	lincRNA gene	Chr5:148673079-148682840 (-)
FVB/NJ	MGP_FVBNJ_G0006819	lincRNA gene	Chr5:147924826-147934569 (-)
LP/J	MGP_LPJ_G0006879	lincRNA gene	Chr5:156361676-156371417 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006801	lincRNA gene	Chr5:170262712-170272453 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007016	lincRNA gene	Chr5:153566026-153577535 (-)
PWK/PhJ	MGP_PWKPhJ_G0006654	lincRNA gene	Chr5:147839418-147849427 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006562	lincRNA gene	Chr5:150865409-150875288 (-)
WSB/EiJ	MGP_WSBEiJ_G0006767	lincRNA gene	Chr5:154377076-154386823 (-)

Homology

• Gene Tree
  Gm21221
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000106740 (Evidence)
• NCBI Gene
  100861794

Representative Sequences			Length	Strain/Species
genomic	100861794	NCBI Gene Model | MGI Sequence Detail	9762	C57BL/6J
transcript	NR_077242	RefSeq | MGI Sequence Detail	1073	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm21221:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54654	Chr5:149726013-149726039 (-)	9,190 bp