C230024C17Rik Gene Detail

Summary

• Symbol
  C230024C17Rik
• Name
  RIKEN cDNA C230024C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439413
  NCBI Gene: 329271
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153596986-153613575 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  621 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439413	lncRNA gene	Chr1:153596986-153613575 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004998	lincRNA gene	Chr1:158565313-158581913 (-)
A/J	MGP_AJ_G0004980	lincRNA gene	Chr1:152173634-152190211 (-)
AKR/J	MGP_AKRJ_G0004958	lincRNA gene	Chr1:156883238-156899983 (-)
BALB/cJ	MGP_BALBcJ_G0004962	lincRNA gene	Chr1:152720917-152737553 (-)
C3H/HeJ	MGP_C3HHeJ_G0004910	lincRNA gene	Chr1:156983351-157000645 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005112	lincRNA gene	Chr1:164040626-164057713 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004525	lincRNA gene	Chr1:144459276-144475704 (-)
CAST/EiJ	MGP_CASTEiJ_G0004859	lincRNA gene	Chr1:156503437-156520172 (-)
CBA/J	MGP_CBAJ_G0004901	lincRNA gene	Chr1:169807740-169826864 (-)
DBA/2J	MGP_DBA2J_G0004921	lincRNA gene	Chr1:151197145-151213768 (-)
FVB/NJ	MGP_FVBNJ_G0004941	lincRNA gene	Chr1:149653931-149671260 (-)
LP/J	MGP_LPJ_G0004998	lincRNA gene	Chr1:159688236-159706172 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004925	lincRNA gene	Chr1:177433306-177450633 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005117	lincRNA gene	Chr1:156661625-156678558 (-)
PWK/PhJ	MGP_PWKPhJ_G0004811	lincRNA gene	Chr1:150236037-150252914 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004737	lincRNA gene	Chr1:155460264-155479105 (-)
WSB/EiJ	MGP_WSBEiJ_G0004906	lincRNA gene	Chr1:156743403-156762919 (-)

Homology

• Gene Tree
  C230024C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving C230024C17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100334 (Evidence)
• NCBI Gene
  329271

Representative Sequences			Length	Strain/Species
genomic	329271	NCBI Gene Model | MGI Sequence Detail	16590	C57BL/6J
transcript	NR_046171	RefSeq | MGI Sequence Detail	3337	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for C230024C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14282	Chr1:153599167-153599174 (-)	14,404 bp