9830132P13Rik Gene Detail

Summary

• Symbol
  9830132P13Rik
• Name
  RIKEN cDNA 9830132P13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439414
  NCBI Gene: 329753
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:127709820-127748869 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1588 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439414	lncRNA gene	Chr3:127709817-127748869 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006299	lincRNA gene	Chr3:130441578-130483129 (+)
A/J	MGP_AJ_G0006292	lincRNA gene	Chr3:125962934-126005163 (+)
AKR/J	MGP_AKRJ_G0006268	lincRNA gene	Chr3:129221083-129261084 (+)
BALB/cJ	MGP_BALBcJ_G0006266	lincRNA gene	Chr3:125826400-125865168 (+)
C3H/HeJ	MGP_C3HHeJ_G0006218	lincRNA gene	Chr3:129601871-129643548 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006431	lincRNA gene	Chr3:135137281-135182339 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005726	lincRNA gene	Chr3:121205308-121245813 (+)
CAST/EiJ	MGP_CASTEiJ_G0006151	lincRNA gene	Chr3:129170107-129210451 (+)
CBA/J	MGP_CBAJ_G0006201	lincRNA gene	Chr3:139706275-139746577 (+)
DBA/2J	MGP_DBA2J_G0006223	lincRNA gene	Chr3:125180480-125222247 (+)
FVB/NJ	MGP_FVBNJ_G0006244	lincRNA gene	Chr3:122763840-122805036 (+)
LP/J	MGP_LPJ_G0006304	lincRNA gene	Chr3:131994332-132033373 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006235	lincRNA gene	Chr3:147648149-147692465 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006437	lincRNA gene	Chr3:128868712-128911124 (+)
PWK/PhJ	MGP_PWKPhJ_G0006089	lincRNA gene	Chr3:124917486-124959390 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006002	lincRNA gene	Chr3:126940193-126978133 (+)
WSB/EiJ	MGP_WSBEiJ_G0006199	lincRNA gene	Chr3:129590312-129634942 (+)

Homology

• Gene Tree
  9830132P13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving 9830132P13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000104763 (Evidence)
• NCBI Gene
  329753

Representative Sequences			Length	Strain/Species
genomic	329753	NCBI Gene Model | MGI Sequence Detail	39050	C57BL/6J
transcript	NR_040552	RefSeq | MGI Sequence Detail	4188	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 9830132P13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31615	Chr3:127709813-127709818 (+)	-4 bp
Tssr31616	Chr3:127724228-127724246 (+)	14,417 bp
Tssr31617	Chr3:127724260-127724286 (+)	14,453 bp
Tssr31618	Chr3:127724634-127724639 (+)	14,817 bp
Tssr31619	Chr3:127743952-127743953 (+)	34,133 bp