6430584L05Rik Gene Detail

Summary

• Symbol
  6430584L05Rik
• Name
  RIKEN cDNA 6430584L05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439415
  NCBI Gene: 330324
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:55373872-55389270 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  524 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439415	lncRNA gene	Chr6:55373872-55389270 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006970	lincRNA gene	Chr6:54804005-54819267 (+)
A/J	MGP_AJ_G0006965	lincRNA gene	Chr6:52257557-52274972 (+)
AKR/J	MGP_AKRJ_G0006935	lincRNA gene	Chr6:54033561-54049792 (+)
BALB/cJ	MGP_BALBcJ_G0006942	lincRNA gene	Chr6:52630833-52646096 (+)
C3H/HeJ	MGP_C3HHeJ_G0006886	lincRNA gene	Chr6:54058576-54073860 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007104	lincRNA gene	Chr6:56028235-56044871 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006351	lincRNA gene	Chr6:49868052-49883414 (+)
CAST/EiJ	MGP_CASTEiJ_G0006802	lincRNA gene	Chr6:53917148-53933643 (+)
CBA/J	MGP_CBAJ_G0006868	lincRNA gene	Chr6:58324198-58339393 (+)
DBA/2J	MGP_DBA2J_G0006888	lincRNA gene	Chr6:52156644-52172126 (+)
FVB/NJ	MGP_FVBNJ_G0006911	lincRNA gene	Chr6:51756631-51772812 (+)
LP/J	MGP_LPJ_G0006970	lincRNA gene	Chr6:54734600-54750865 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006891	lincRNA gene	Chr6:60826323-60842869 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007108	lincRNA gene	Chr6:54005771-54022700 (+)
PWK/PhJ	MGP_PWKPhJ_G0006742	lincRNA gene	Chr6:51824068-51839638 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006652	lincRNA gene	Chr6:53390278-53405819 (+)
WSB/EiJ	MGP_WSBEiJ_G0006857	lincRNA gene	Chr6:54034502-54051308 (+)

Homology

• Gene Tree
  6430584L05Rik
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000108228 (Evidence)
• NCBI Gene
  330324

Representative Sequences			Length	Strain/Species
genomic	330324	NCBI Gene Model | MGI Sequence Detail	15399	C57BL/6J
transcript	NR_046179	RefSeq | MGI Sequence Detail	3151	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;