Gm21969 Gene Detail

Summary

• Symbol
  Gm21969
• Name
  predicted gene 21969

• Feature Type
  protein coding gene
• IDs
  MGI:5439438
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:139330497-139390002 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic

Strain
Comparison

• SNPs within 2kb
  1939 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439438	protein coding gene	Chr4:139330497-139390002 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029020	protein coding gene	Chr4:142447684-142513203 (+)
A/J	MGP_AJ_G0028979	protein coding gene	Chr4:136325678-136385847 (+)
AKR/J	MGP_AKRJ_G0028931	protein coding gene	Chr4:140229556-140295234 (+)
BALB/cJ	MGP_BALBcJ_G0029003	protein coding gene	Chr4:137002057-137062762 (+)
C3H/HeJ	MGP_C3HHeJ_G0028717	protein coding gene	Chr4:140620763-140683387 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029444	protein coding gene	Chr4:147502310-147564055 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026715	protein coding gene	Chr4:129275846-129335683 (+)
CAST/EiJ	MGP_CASTEiJ_G0028149	protein coding gene	Chr4:138812059-138877668 (+)
CBA/J	MGP_CBAJ_G0028681	protein coding gene	Chr4:151739290-151804514 (+)
DBA/2J	MGP_DBA2J_G0028831	protein coding gene	Chr4:136725178-136785073 (+)
FVB/NJ	MGP_FVBNJ_G0028798	protein coding gene	Chr4:135761251-135820680 (+)
LP/J	MGP_LPJ_G0028930	protein coding gene	Chr4:142531639-142591297 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028824	protein coding gene	Chr4:155636054-155699257 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029482	protein coding gene	Chr4:140753935-140819411 (+)
PWK/PhJ	MGP_PWKPhJ_G0027870	protein coding gene	Chr4:133573016-133633267 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027695	protein coding gene	Chr4:136548466-136609596 (+)
WSB/EiJ	MGP_WSBEiJ_G0028227	protein coding gene	Chr4:141019265-141082299 (+)

Homology

• Gene Tree
  Gm21969
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm21969
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000094439 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094439	Ensembl Gene Model | MGI Sequence Detail	59506	C57BL/6J
transcript	ENSMUST00000178644	Ensembl | MGI Sequence Detail	4402	Not Applicable
polypeptide	ENSMUSP00000136776	Ensembl | MGI Sequence Detail	289	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039008 Intermediate filament, rod domain

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8