Gm21980 Gene Detail

Summary

• Symbol
  Gm21980
• Name
  predicted gene 21980

• Feature Type
  lncRNA gene
• IDs
  MGI:5439449
  NCBI Gene: 118568646
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:42293436-42293841 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic

Strain
Comparison

• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439449	lncRNA gene	Chr4:42288454-42294246 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006412	lincRNA gene	Chr4:40048975-40049467 (+)
A/J	MGP_AJ_G0006404	lincRNA gene	Chr4:38236950-38237354 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0006378	lincRNA gene	Chr4:38576708-38577113 (+)
C3H/HeJ	MGP_C3HHeJ_G0006328	lincRNA gene	Chr4:39708629-39709034 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0006333	lincRNA gene	Chr4:39039935-39041558 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0006198	lincRNA gene	Chr4:38210675-38211262 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21980
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm21980
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000096327 (Evidence)
• NCBI Gene
  118568646

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096327	Ensembl Gene Model | MGI Sequence Detail	406	C57BL/6J
transcript	ENSMUST00000180032	Ensembl | MGI Sequence Detail	143	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:192799 Cattanach BM, et al., A further duplication involving chromosome 4, Dp(4)20H. Mouse Genome. 1996;94(3):680
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;