Gm21986 Gene Detail

Summary

• Symbol
  Gm21986
• Name
  predicted gene 21986

• Feature Type
  lncRNA gene
• IDs
  MGI:5439455
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:100339445-100364954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439455	lncRNA gene	ChrX:100339445-100364954 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015786	unclassified non-coding RNA gene	ChrX:97796085-97821589 (+)
A/J	MGP_AJ_G0015761	unclassified non-coding RNA gene	ChrX:97800861-97826284 (+)
AKR/J	MGP_AKRJ_G0015724	unclassified non-coding RNA gene	ChrX:100602052-100628735 (+)
BALB/cJ	MGP_BALBcJ_G0015722	unclassified non-coding RNA gene	ChrX:96540205-96565705 (+)
C3H/HeJ	MGP_C3HHeJ_G0015543	unclassified non-coding RNA gene	ChrX:98202416-98227981 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016177	unclassified non-coding RNA gene	ChrX:100703672-100729177 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013900	unclassified non-coding RNA gene	ChrX:95555014-95581586 (+)
CAST/EiJ	MGP_CASTEiJ_G0015099	unclassified non-coding RNA gene	ChrX:82506657-82532071 (+)
CBA/J	MGP_CBAJ_G0015522	unclassified non-coding RNA gene	ChrX:103817447-103842934 (+)
DBA/2J	MGP_DBA2J_G0015621	unclassified non-coding RNA gene	ChrX:97017591-97043091 (+)
FVB/NJ	MGP_FVBNJ_G0015626	unclassified non-coding RNA gene	ChrX:96399784-96425122 (+)
LP/J	MGP_LPJ_G0015703	unclassified non-coding RNA gene	ChrX:98757848-98783539 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015649	unclassified non-coding RNA gene	ChrX:108370023-108395515 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016222	unclassified non-coding RNA gene	ChrX:97490346-97515865 (+)
PWK/PhJ	MGP_PWKPhJ_G0014881	unclassified non-coding RNA gene	ChrX:80113771-80139716 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014667	unclassified non-coding RNA gene	ChrX:83411585-83438712 (+)
WSB/EiJ	MGP_WSBEiJ_G0015202	unclassified non-coding RNA gene	ChrX:96195298-96220780 (+)

Homology

• Gene Tree
  Gm21986
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000096056 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096056	Ensembl Gene Model | MGI Sequence Detail	25510	C57BL/6J
transcript	ENSMUST00000113671	Ensembl | MGI Sequence Detail	5560	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;