DQ267100 Gene Detail

Summary

• Symbol
  DQ267100
• Name
  snoRNA DQ267100
• Synonyms
  Im snoRNA 1

• Feature Type
  snoRNA gene
• IDs
  MGI:5439865
  NCBI Gene: 100861570
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:109616051-109616121 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439865	snoRNA gene	Chr12:109616051-109616122 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038666	snoRNA gene	Chr12:111883664-111883735 (+)
A/J	MGP_AJ_G0038658	snoRNA gene	Chr12:107573195-107573266 (+)
AKR/J	MGP_AKRJ_G0038593	snoRNA gene	Chr12:110709589-110709660 (+)
BALB/cJ	MGP_BALBcJ_G0038643	snoRNA gene	Chr12:108045989-108046060 (+)
C3H/HeJ	MGP_C3HHeJ_G0038305	snoRNA gene	Chr12:111155509-111155580 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039188	snoRNA gene	Chr12:115300163-115300234 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035946	snoRNA gene	Chr12:104098876-104098947 (+)
CAST/EiJ	MGP_CASTEiJ_G0037446	snoRNA gene	Chr12:106107182-106107253 (+)
CBA/J	MGP_CBAJ_G0038277	snoRNA gene	Chr12:119839261-119839332 (+)
DBA/2J	MGP_DBA2J_G0038466	snoRNA gene	Chr12:107130254-107130325 (+)
FVB/NJ	MGP_FVBNJ_G0038419	snoRNA gene	Chr12:105920349-105920420 (+)
LP/J	MGP_LPJ_G0038505	snoRNA gene	Chr12:111713788-111713859 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038417	snoRNA gene	Chr12:122996396-122996467 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039291	snoRNA gene	Chr12:110194455-110194526 (+)
PWK/PhJ	MGP_PWKPhJ_G0037132	snoRNA gene	Chr12:101736728-101736799 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036889	snoRNA gene	Chr12:104360767-104360838 (+)
WSB/EiJ	MGP_WSBEiJ_G0037679	snoRNA gene	Chr12:111106914-111106985 (+)

Homology

• Gene Tree
  DQ267100
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084549 (Evidence)
• NCBI Gene
  100861570

Representative Sequences			Length	Strain/Species
genomic	100861570	NCBI Gene Model | MGI Sequence Detail	71	C57BL/6J
transcript	NR_046304	RefSeq | MGI Sequence Detail	71	Kunming

References

• Summaries
  All 4
• Earliest
  J:104984 Xiao Y, et al., Characterization of three novel imprinted snoRNAs from mouse Irm gene. Biochem Biophys Res Commun. 2006 Feb 24;340(4):1217-23

TSS for DQ267100:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115166	Chr12:109615965-109615971 (+)	-83 bp