DQ267101 Gene Detail

Summary

• Symbol
  DQ267101
• Name
  snoRNA DQ267101
• Synonyms
  Im snoRNA 2

• Feature Type
  snoRNA gene
• IDs
  MGI:5439874
  NCBI Gene: 100861571
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:109617858-109617929 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439874	snoRNA gene	Chr12:109617858-109617930 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038667	snoRNA gene	Chr12:111885471-111885543 (+)
A/J	MGP_AJ_G0038659	snoRNA gene	Chr12:107575004-107575076 (+)
AKR/J	MGP_AKRJ_G0038594	snoRNA gene	Chr12:110711399-110711471 (+)
BALB/cJ	MGP_BALBcJ_G0038644	snoRNA gene	Chr12:108047796-108047868 (+)
C3H/HeJ	MGP_C3HHeJ_G0038306	snoRNA gene	Chr12:111157319-111157391 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039189	snoRNA gene	Chr12:115301970-115302042 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035947	snoRNA gene	Chr12:104100674-104100746 (+)
CAST/EiJ	MGP_CASTEiJ_G0037447	snoRNA gene	Chr12:106108991-106109063 (+)
CBA/J	MGP_CBAJ_G0038278	snoRNA gene	Chr12:119841071-119841143 (+)
DBA/2J	MGP_DBA2J_G0038467	snoRNA gene	Chr12:107132052-107132124 (+)
FVB/NJ	MGP_FVBNJ_G0038420	snoRNA gene	Chr12:105922156-105922228 (+)
LP/J	MGP_LPJ_G0038506	snoRNA gene	Chr12:111715595-111715667 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038418	snoRNA gene	Chr12:122998203-122998275 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039292	snoRNA gene	Chr12:110196262-110196334 (+)
PWK/PhJ	MGP_PWKPhJ_G0037133	snoRNA gene	Chr12:101738648-101738720 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036890	snoRNA gene	Chr12:104362576-104362648 (+)
WSB/EiJ	MGP_WSBEiJ_G0037680	snoRNA gene	Chr12:111108721-111108793 (+)

Homology

• Gene Tree
  DQ267101
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000064496 (Evidence)
• NCBI Gene
  100861571

Representative Sequences			Length	Strain/Species
genomic	100861571	NCBI Gene Model | MGI Sequence Detail	72	C57BL/6J
transcript	NR_046305	RefSeq | MGI Sequence Detail	72	Kunming

References

• Summaries
  All 4
• Earliest
  J:104984 Xiao Y, et al., Characterization of three novel imprinted snoRNAs from mouse Irm gene. Biochem Biophys Res Commun. 2006 Feb 24;340(4):1217-23

TSS for DQ267101:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115169	Chr12:109617411-109617431 (+)	-437 bp