Gm21998 Pseudogene Detail

Summary

• Symbol
  Gm21998
• Name
  predicted gene 21998

• Feature Type
  pseudogene
• IDs
  MGI:5440227
  NCBI Gene: 100534276
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:102047330-102048637 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5440227	pseudogene	ChrX:102047327-102048685 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014681	pseudogene	ChrX:99640263-99641569 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0014627	pseudogene	ChrX:98362654-98363960 (-)
C3H/HeJ	MGP_C3HHeJ_G0014462	pseudogene	ChrX:100146905-100148212 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014088	pseudogene	ChrX:84379261-84380568 (-)
CBA/J	MGP_CBAJ_G0014451	pseudogene	ChrX:105843736-105845042 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014632	pseudogene	ChrX:100595047-100596353 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014560	pseudogene	ChrX:110383765-110385072 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015083	pseudogene	ChrX:99367598-99368905 (+)
PWK/PhJ	MGP_PWKPhJ_G0013893	pseudogene	ChrX:81931593-81932900 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013691	pseudogene	ChrX:85176880-85178186 (-)
WSB/EiJ	MGP_WSBEiJ_G0014168	pseudogene	ChrX:98059248-98060554 (-)

Homology

• Gene Tree
  Gm21998
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000081779 (Evidence)
• NCBI Gene
  100534276

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081779	Ensembl Gene Model | MGI Sequence Detail	1308	C57BL/6J
transcript	ENSMUST00000117552	Ensembl | MGI Sequence Detail	1308	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;