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Hm629797 Gene Detail
Summary
  • Symbol
    Hm629797
  • Name
    cDNA sequence HM629797
  • Synonyms
    Mrhl
Location &
Maps
more
  • Sequence Map
    Chr8:86720874-86723271 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    160 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5440479
 lncRNA gene Chr8:86720874-86723271 (+)
129S1/SvImJ MGP_129S1SvImJ_G0037084
 sense intronic lncRNA gene Chr8:86964661-86967061 (+)
A/J MGP_AJ_G0037072
 sense intronic lncRNA gene Chr8:83539138-83541537 (+)
AKR/J MGP_AKRJ_G0037019
 sense intronic lncRNA gene Chr8:86015845-86018245 (+)
BALB/cJ MGP_BALBcJ_G0037063
 sense intronic lncRNA gene Chr8:83681243-83683643 (+)
C3H/HeJ MGP_C3HHeJ_G0036750
 sense intronic lncRNA gene Chr8:86640239-86642638 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037575
 sense intronic lncRNA gene Chr8:90307765-90310162 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034619
 sense intronic lncRNA gene Chr8:77285406-77287836 (+)
CAST/EiJ MGP_CASTEiJ_G0035936
 sense intronic lncRNA gene Chr8:86045753-86048149 (+)
CBA/J MGP_CBAJ_G0036725
 sense intronic lncRNA gene Chr8:93365721-93368120 (+)
DBA/2J MGP_DBA2J_G0036900
 sense intronic lncRNA gene Chr8:83166162-83168561 (+)
FVB/NJ MGP_FVBNJ_G0036850
 sense intronic lncRNA gene Chr8:82112663-82115062 (+)
LP/J MGP_LPJ_G0036947
 sense intronic lncRNA gene Chr8:87073238-87075638 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036857
 sense intronic lncRNA gene Chr8:95891489-95893886 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037693
 sense intronic lncRNA gene Chr8:86002880-86005277 (+)
PWK/PhJ MGP_PWKPhJ_G0035630
 sense intronic lncRNA gene Chr8:82409716-82411995 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035438
 sense intronic lncRNA gene Chr8:84799699-84802143 (+)
WSB/EiJ MGP_WSBEiJ_G0036138
 sense intronic lncRNA gene Chr8:86429628-86432024 (+)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098439 Ensembl Gene Model | MGI Sequence Detail 2398 C57BL/6J ±  kb
transcript ENSMUST00000183645 Ensembl | MGI Sequence Detail 2398 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:188403 Nishant KT, et al., Characterization of a mouse recombination hot spot locus encoding a novel non-protein-coding RNA. Mol Cell Biol. 2004 Jun;24(12):5620-34
  • Latest
    J:344715 Kayyar B, et al., Molecular functions of Mrhl lncRNA in mouse spermatogenesis. Reproduction. 2023 Sep 1;166(3):R39-R50
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory