Gm22009 Gene Detail

Summary

• Symbol
  Gm22009
• Name
  predicted gene, 22009

• Feature Type
  snoRNA gene
• IDs
  MGI:5451786
  NCBI Gene: 115489854
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:68992438-68992780 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5451786	snoRNA gene	Chr3:68992438-68992780 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036834	snoRNA gene	Chr3:68313924-68314266 (-)
A/J	MGP_AJ_G0036822	snoRNA gene	Chr3:66273181-66273529 (-)
AKR/J	MGP_AKRJ_G0036771	snoRNA gene	Chr3:67691677-67692025 (-)
BALB/cJ	MGP_BALBcJ_G0036813	snoRNA gene	Chr3:66157431-66157779 (-)
C3H/HeJ	MGP_C3HHeJ_G0036499	snoRNA gene	Chr3:67935062-67935410 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037327	snoRNA gene	Chr3:70863502-70863844 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034389	snoRNA gene	Chr3:62547196-62547592 (-)
CAST/EiJ	MGP_CASTEiJ_G0035688	snoRNA gene	Chr3:67887289-67887629 (-)
CBA/J	MGP_CBAJ_G0036474	snoRNA gene	Chr3:73050686-73051034 (-)
DBA/2J	MGP_DBA2J_G0036650	snoRNA gene	Chr3:65780901-65781249 (-)
FVB/NJ	MGP_FVBNJ_G0036603	snoRNA gene	Chr3:64400537-64400881 (-)
LP/J	MGP_LPJ_G0036697	snoRNA gene	Chr3:69243977-69244319 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036608	snoRNA gene	Chr3:77666569-77666915 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037442	snoRNA gene	Chr3:67581613-67581955 (-)
PWK/PhJ	MGP_PWKPhJ_G0035382	snoRNA gene	Chr3:65507908-65508351 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035196	snoRNA gene	Chr3:66691572-66691910 (-)
WSB/EiJ	MGP_WSBEiJ_G0035891	snoRNA gene	Chr3:67736310-67736652 (-)

Homology

• Gene Tree
  Gm22009
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089417 (Evidence)
• NCBI Gene
  115489854

Representative Sequences			Length	Strain/Species
genomic	115489854	NCBI Gene Model | MGI Sequence Detail	343	C57BL/6J
transcript	XR_004941763	RefSeq | MGI Sequence Detail	343	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm22009:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33532	Chr3:68992771-68992785 (-)	2 bp