Gm22489 Gene Detail

Summary

• Symbol
  Gm22489
• Name
  predicted gene, 22489

• Feature Type
  snoRNA gene
• IDs
  MGI:5452266
  NCBI Gene: 115487678
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:160863420-160863481 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452266	snoRNA gene	Chr1:160863420-160863481 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038453	snoRNA gene	Chr1:166286949-166287010 (+)
A/J	MGP_AJ_G0038443	snoRNA gene	Chr1:159519297-159519358 (+)
AKR/J	MGP_AKRJ_G0038381	snoRNA gene	Chr1:164387624-164387685 (+)
BALB/cJ	MGP_BALBcJ_G0038430	snoRNA gene	Chr1:160060956-160061017 (+)
C3H/HeJ	MGP_C3HHeJ_G0038093	snoRNA gene	Chr1:164588811-164588872 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038968	snoRNA gene	Chr1:171933437-171933498 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035749	snoRNA gene	Chr1:151637222-151637283 (+)
CAST/EiJ	MGP_CASTEiJ_G0037238	snoRNA gene	Chr1:164197854-164197915 (+)
CBA/J	MGP_CBAJ_G0038065	snoRNA gene	Chr1:178015297-178015358 (+)
DBA/2J	MGP_DBA2J_G0038256	snoRNA gene	Chr1:158498676-158498737 (+)
FVB/NJ	MGP_FVBNJ_G0038206	snoRNA gene	Chr1:156907820-156907881 (+)
LP/J	MGP_LPJ_G0038295	snoRNA gene	Chr1:167376764-167376825 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038205	snoRNA gene	Chr1:185588785-185588846 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039077	snoRNA gene	Chr1:164206328-164206389 (+)
PWK/PhJ	MGP_PWKPhJ_G0036923	snoRNA gene	Chr1:157654705-157654766 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036679	snoRNA gene	Chr1:163101733-163101794 (+)
WSB/EiJ	MGP_WSBEiJ_G0037469	snoRNA gene	Chr1:164396560-164396621 (+)

Homology

• Gene Tree
  Gm22489
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080463 (Evidence)
• NCBI Gene
  115487678

Representative Sequences			Length	Strain/Species
genomic	115487678	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
transcript	XR_004936852	RefSeq | MGI Sequence Detail	62	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm22489:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9675	Chr1:160863093-160863112 (+)	-317 bp
Tssr9676	Chr1:160863418-160863422 (+)	0 bp