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Mir5621 Gene Detail
Summary
  • Symbol
    Mir5621
  • Name
    microRNA 5621
  • Synonyms
    mmu-mir-5621
Location &
Maps
more
  • Sequence Map
    Chr11:115686650-115686712 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    70 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5452341
 miRNA gene Chr11:115686650-115686712 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007893
 miRNA gene Chr11:119862491-119862553 (+)
A/J MGP_AJ_G0007887
 miRNA gene Chr11:114619646-114619708 (+)
AKR/J MGP_AKRJ_G0007862
 miRNA gene Chr11:118041248-118041310 (+)
BALB/cJ MGP_BALBcJ_G0007866
 miRNA gene Chr11:115037185-115037247 (+)
C3H/HeJ MGP_C3HHeJ_G0007812
 miRNA gene Chr11:118390408-118390470 (+)
C57BL/6NJ MGP_C57BL6NJ_G0008046
 miRNA gene Chr11:123525618-123525680 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007183
 miRNA gene Chr11:111643345-111643407 (+)
CAST/EiJ MGP_CASTEiJ_G0007705
 miRNA gene Chr11:119729898-119729960 (+)
CBA/J MGP_CBAJ_G0007783
 miRNA gene Chr11:128414614-128414676 (+)
DBA/2J MGP_DBA2J_G0007818
 miRNA gene Chr11:114045907-114045969 (+)
FVB/NJ MGP_FVBNJ_G0007837
 miRNA gene Chr11:113542550-113542612 (+)
LP/J MGP_LPJ_G0007896
 miRNA gene Chr11:120244360-120244422 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007807
 miRNA gene Chr11:127526663-127526725 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0008040
 miRNA gene Chr11:118692988-118693050 (+)
PWK/PhJ MGP_PWKPhJ_G0007631
 miRNA gene Chr11:115356691-115356753 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007527
 miRNA gene Chr11:118440898-118440954 (+)
WSB/EiJ MGP_WSBEiJ_G0007773
 miRNA gene Chr11:118655339-118655401 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100885833 NCBI Gene Model | MGI Sequence Detail 63 C57BL/6J ±  kb
transcript NR_049194 RefSeq | MGI Sequence Detail 63 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0019189
References
more
  • Summaries
    All 5
    Gene Ontology 1
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:228158 Li J, et al., MiR-154-5p regulates osteogenic differentiation of adipose-derived mesenchymal stem cells under tensile stress through the Wnt/PCP pathway by targeting Wnt11. Bone. 2015 Sep;78:130-41
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory