Gm22589 Gene Detail

Summary

• Symbol
  Gm22589
• Name
  predicted gene, 22589

• Feature Type
  snoRNA gene
• IDs
  MGI:5452366
  NCBI Gene: 115488830
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:35461654-35461730 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452366	snoRNA gene	Chr17:35461654-35461730 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038894	snoRNA gene	Chr17:35394146-35394222 (+)
A/J	MGP_AJ_G0038890	snoRNA gene	Chr17:34212824-34212900 (+)
AKR/J	MGP_AKRJ_G0038824	snoRNA gene	Chr17:34692963-34693039 (+)
BALB/cJ	MGP_BALBcJ_G0038872	snoRNA gene	Chr17:34358322-34358398 (+)
C3H/HeJ	MGP_C3HHeJ_G0038536	snoRNA gene	Chr17:35098352-35098428 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039421	snoRNA gene	Chr17:36749546-36749622 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036156	snoRNA gene	Chr17:31985243-31985319 (+)
CAST/EiJ	MGP_CASTEiJ_G0037677	snoRNA gene	Chr17:35107429-35107505 (+)
CBA/J	MGP_CBAJ_G0038508	snoRNA gene	Chr17:38251530-38251606 (+)
DBA/2J	MGP_DBA2J_G0038696	snoRNA gene	Chr17:33540098-33540174 (+)
FVB/NJ	MGP_FVBNJ_G0038649	snoRNA gene	Chr17:33382215-33382291 (+)
LP/J	MGP_LPJ_G0038736	snoRNA gene	Chr17:35723488-35723564 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038649	snoRNA gene	Chr17:37178922-37178998 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039523	snoRNA gene	Chr17:34923238-34923314 (+)
PWK/PhJ	MGP_PWKPhJ_G0037362	snoRNA gene	Chr17:32381284-32381360 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037119	snoRNA gene	Chr17:32932075-32932151 (+)
WSB/EiJ	MGP_WSBEiJ_G0037905	snoRNA gene	Chr17:35052241-35052317 (+)

Homology

• Gene Tree
  Gm22589
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm22589
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000075770 (Evidence)
• NCBI Gene
  115488830

Representative Sequences			Length	Strain/Species
genomic	115488830	NCBI Gene Model | MGI Sequence Detail	77	C57BL/6J
transcript	XR_004939749	RefSeq | MGI Sequence Detail	77	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm22589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144321	Chr17:35461319-35461331 (+)	-329 bp