Gm23080 Gene Detail

Summary

• Symbol
  Gm23080
• Name
  predicted gene, 23080

• Feature Type
  snRNA gene
• IDs
  MGI:5452857
  NCBI Gene: 115488748
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:35958242-35958344 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452857	snRNA gene	Chr16:35958242-35958344 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037576	snRNA gene	Chr16:34510006-34510108 (-)
A/J	MGP_AJ_G0037573	snRNA gene	Chr16:32832041-32832143 (-)
AKR/J	MGP_AKRJ_G0037509	snRNA gene	Chr16:33990236-33990338 (-)
BALB/cJ	MGP_BALBcJ_G0037558	snRNA gene	Chr16:32956483-32956585 (-)
C3H/HeJ	MGP_C3HHeJ_G0037235	snRNA gene	Chr16:34111388-34111490 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038077	snRNA gene	Chr16:35249107-35249209 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0037207	snRNA gene	Chr16:36704649-36704751 (-)
DBA/2J	MGP_DBA2J_G0037386	snRNA gene	Chr16:32659720-32659822 (-)
FVB/NJ	MGP_FVBNJ_G0037332	snRNA gene	Chr16:32651772-32651874 (-)
LP/J	MGP_LPJ_G0037436	snRNA gene	Chr16:34237350-34237452 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037345	snRNA gene	Chr16:35955095-35955197 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038189	snRNA gene	Chr16:34051220-34051322 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm23080
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm23080
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000088471 (Evidence)
• NCBI Gene
  115488748

Representative Sequences			Length	Strain/Species
genomic	115488748	NCBI Gene Model | MGI Sequence Detail	103	C57BL/6J
transcript	XR_004939444	RefSeq | MGI Sequence Detail	103	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:154850 Bilodeau M, et al., A retroviral strategy that efficiently creates chromosomal deletions in mammalian cells. Nat Methods. 2007 Mar;4(3):263-8
• Latest
  J:154051 Bilodeau M, et al., Analysis of blood stem cell activity and cystatin gene expression in a mouse model presenting a chromosomal deletion encompassing Csta and Stfa2l1. PLoS One. 2009;4(10):e7500