Gm23347 Gene Detail

Summary

• Symbol
  Gm23347
• Name
  predicted gene, 23347

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:5453124
  NCBI Gene: 115488054
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:109640347-109640428 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453124	snoRNA gene	Chr12:109640347-109640428 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038673	snoRNA gene	Chr12:111914217-111914298 (+)
A/J	MGP_AJ_G0038665	snoRNA gene	Chr12:107598564-107598645 (+)
AKR/J	MGP_AKRJ_G0038600	snoRNA gene	Chr12:110733804-110733885 (+)
BALB/cJ	MGP_BALBcJ_G0038650	snoRNA gene	Chr12:108070285-108070366 (+)
C3H/HeJ	MGP_C3HHeJ_G0038312	snoRNA gene	Chr12:111179191-111179272 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039195	snoRNA gene	Chr12:115325526-115325607 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035951	snoRNA gene	Chr12:104119878-104119961 (+)
CAST/EiJ	MGP_CASTEiJ_G0037453	snoRNA gene	Chr12:106136627-106136710 (+)
CBA/J	MGP_CBAJ_G0038284	snoRNA gene	Chr12:119863464-119863545 (+)
DBA/2J	MGP_DBA2J_G0038473	snoRNA gene	Chr12:107154538-107154619 (+)
FVB/NJ	MGP_FVBNJ_G0038426	snoRNA gene	Chr12:105944647-105944728 (+)
LP/J	MGP_LPJ_G0038512	snoRNA gene	Chr12:111738087-111738168 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038424	snoRNA gene	Chr12:123022766-123022849 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039298	snoRNA gene	Chr12:110219618-110219699 (+)
PWK/PhJ	MGP_PWKPhJ_G0037139	snoRNA gene	Chr12:101763250-101763333 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036896	snoRNA gene	Chr12:104385130-104385213 (+)
WSB/EiJ	MGP_WSBEiJ_G0037686	snoRNA gene	Chr12:111135065-111135146 (+)

Homology

• Gene Tree
  Gm23347
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000065757 (Evidence)
• NCBI Gene
  115488054

Representative Sequences			Length	Strain/Species
genomic	115488054	NCBI Gene Model | MGI Sequence Detail	82	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23347:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115170	Chr12:109639799-109639803 (+)	-546 bp