Gm23547 Gene Detail

Summary

• Symbol
  Gm23547
• Name
  predicted gene, 23547

• Feature Type
  snoRNA gene
• IDs
  MGI:5453324
  NCBI Gene: 115490496
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:124692195-124692465 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453324	snoRNA gene	Chr6:124692195-124692465 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039355	snoRNA gene	Chr6:128018780-128019049 (+)
A/J	MGP_AJ_G0039352	snoRNA gene	Chr6:123205465-123205736 (+)
AKR/J	MGP_AKRJ_G0039278	snoRNA gene	Chr6:126565006-126565283 (+)
BALB/cJ	MGP_BALBcJ_G0039332	snoRNA gene	Chr6:122800298-122800569 (+)
C3H/HeJ	MGP_C3HHeJ_G0038993	snoRNA gene	Chr6:126613553-126613824 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039881	snoRNA gene	Chr6:131402252-131402522 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036557	snoRNA gene	Chr6:120392797-120393067 (+)
CAST/EiJ	MGP_CASTEiJ_G0038125	snoRNA gene	Chr6:126814869-126815133 (+)
CBA/J	MGP_CBAJ_G0038962	snoRNA gene	Chr6:136433135-136433406 (+)
DBA/2J	MGP_DBA2J_G0039150	snoRNA gene	Chr6:122132004-122132274 (+)
FVB/NJ	MGP_FVBNJ_G0039106	snoRNA gene	Chr6:121035442-121035713 (+)
LP/J	MGP_LPJ_G0039195	snoRNA gene	Chr6:128185957-128186227 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039110	snoRNA gene	Chr6:140488536-140488804 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039980	snoRNA gene	Chr6:126456976-126457246 (+)
PWK/PhJ	MGP_PWKPhJ_G0037802	snoRNA gene	Chr6:120359619-120359883 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037556	snoRNA gene	Chr6:124531758-124532021 (+)
WSB/EiJ	MGP_WSBEiJ_G0038352	snoRNA gene	Chr6:126813759-126814027 (+)

Homology

• Gene Tree
  Gm23547
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000088835 (Evidence)
• NCBI Gene
  115490496

Representative Sequences			Length	Strain/Species
genomic	115490496	NCBI Gene Model | MGI Sequence Detail	271	C57BL/6J
transcript	XR_004933956	RefSeq | MGI Sequence Detail	271	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23547:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58841	Chr6:124690969-124690994 (+)	-1,213 bp
Tssr58842	Chr6:124692193-124692196 (+)	0 bp