Gm23850 Gene Detail

Summary

• Symbol
  Gm23850
• Name
  predicted gene, 23850

• Feature Type
  snRNA gene
• IDs
  MGI:5453627
  NCBI Gene: 115489862
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:86271764-86271932 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453627	snRNA gene	Chr3:86271764-86271932 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037823	snRNA gene	Chr3:86417827-86417995 (+)
A/J	MGP_AJ_G0037810	snRNA gene	Chr3:83483287-83483455 (+)
AKR/J	MGP_AKRJ_G0037749	snRNA gene	Chr3:85483810-85483978 (+)
BALB/cJ	MGP_BALBcJ_G0037791	snRNA gene	Chr3:83562430-83562598 (+)
C3H/HeJ	MGP_C3HHeJ_G0037465	snRNA gene	Chr3:85781527-85781695 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038320	snRNA gene	Chr3:89616380-89616548 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035221	snRNA gene	Chr3:79119020-79119188 (+)
CAST/EiJ	MGP_CASTEiJ_G0036628	snRNA gene	Chr3:85993629-85993799 (+)
CBA/J	MGP_CBAJ_G0037440	snRNA gene	Chr3:92612710-92612878 (+)
DBA/2J	MGP_DBA2J_G0037621	snRNA gene	Chr3:82977554-82977722 (+)
FVB/NJ	MGP_FVBNJ_G0037570	snRNA gene	Chr3:81279315-81279483 (+)
LP/J	MGP_LPJ_G0037674	snRNA gene	Chr3:87346244-87346412 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037584	snRNA gene	Chr3:98874357-98874525 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038432	snRNA gene	Chr3:85266508-85266676 (+)
PWK/PhJ	MGP_PWKPhJ_G0036323	snRNA gene	Chr3:82781713-82781881 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036104	snRNA gene	Chr3:84435439-84435609 (+)
WSB/EiJ	MGP_WSBEiJ_G0036842	snRNA gene	Chr3:85640532-85640700 (+)

Homology

• Gene Tree
  Gm23850
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000065764 (Evidence)
• NCBI Gene
  115489862

Representative Sequences			Length	Strain/Species
genomic	115489862	NCBI Gene Model | MGI Sequence Detail	169	C57BL/6J
transcript	XR_004941767	RefSeq | MGI Sequence Detail	169	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23850:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29786	Chr3:86269794-86269795 (+)	-1,969 bp