Gm23859 Gene Detail

Summary

• Symbol
  Gm23859
• Name
  predicted gene, 23859

• Feature Type
  snRNA gene
• IDs
  MGI:5453636
  NCBI Gene: 115488988
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:90247023-90247086 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453636	snRNA gene	Chr18:90247023-90247086 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037692	snRNA gene	Chr18:91589488-91589551 (+)
A/J	MGP_AJ_G0037682	snRNA gene	Chr18:87510389-87510452 (+)
AKR/J	MGP_AKRJ_G0037620	snRNA gene	Chr18:90114447-90114510 (+)
BALB/cJ	MGP_BALBcJ_G0037666	snRNA gene	Chr18:87817925-87817988 (+)
C3H/HeJ	MGP_C3HHeJ_G0037339	snRNA gene	Chr18:90347308-90347371 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038191	snRNA gene	Chr18:93964317-93964380 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035111	snRNA gene	Chr18:86142622-86142685 (+)
CAST/EiJ	MGP_CASTEiJ_G0036504	snRNA gene	Chr18:90794219-90794282 (+)
CBA/J	MGP_CBAJ_G0037313	snRNA gene	Chr18:97322642-97322705 (+)
DBA/2J	MGP_DBA2J_G0037494	snRNA gene	Chr18:87101871-87101934 (+)
FVB/NJ	MGP_FVBNJ_G0037440	snRNA gene	Chr18:86367484-86367547 (+)
LP/J	MGP_LPJ_G0037546	snRNA gene	Chr18:91517297-91517360 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037454	snRNA gene	Chr18:99349256-99349319 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038301	snRNA gene	Chr18:90458447-90458510 (+)
PWK/PhJ	MGP_PWKPhJ_G0036200	snRNA gene	Chr18:87431425-87431488 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035985	snRNA gene	Chr18:90378738-90378801 (+)
WSB/EiJ	MGP_WSBEiJ_G0036721	snRNA gene	Chr18:90360285-90360348 (+)

Homology

• Gene Tree
  Gm23859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm23859
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089008 (Evidence)
• NCBI Gene
  115488988

Representative Sequences			Length	Strain/Species
genomic	115488988	NCBI Gene Model | MGI Sequence Detail	64	C57BL/6J
transcript	XR_004940094	RefSeq | MGI Sequence Detail	64	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:45709 Melloy PG, et al., No turning, a mouse mutation causing left-right and axial patterning defects. Dev Biol. 1998 Jan 1;193(1):77-89
• Latest
  J:132045 Chatterjee B, et al., Nt mutation causing laterality defects associated with deletion of rotatin. Mamm Genome. 2007 May;18(5):310-5