Gm23879 Gene Detail

Summary

• Symbol
  Gm23879
• Name
  predicted gene, 23879

• Feature Type
  snRNA gene
• IDs
  MGI:5453656
  NCBI Gene: 115487680
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:69994163-69994288 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453656	snRNA gene	Chr1:69994163-69994288 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037158	snRNA gene	Chr1:70339600-70339725 (-)
A/J	MGP_AJ_G0037141	snRNA gene	Chr1:67842105-67842230 (-)
AKR/J	MGP_AKRJ_G0037090	snRNA gene	Chr1:69793762-69793887 (-)
BALB/cJ	MGP_BALBcJ_G0037133	snRNA gene	Chr1:67949360-67949485 (-)
C3H/HeJ	MGP_C3HHeJ_G0036819	snRNA gene	Chr1:70117049-70117174 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037646	snRNA gene	Chr1:73016866-73016991 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034684	snRNA gene	Chr1:63583002-63583127 (-)
CAST/EiJ	MGP_CASTEiJ_G0036008	snRNA gene	Chr1:69335179-69335308 (-)
CBA/J	MGP_CBAJ_G0036794	snRNA gene	Chr1:75487979-75488104 (-)
DBA/2J	MGP_DBA2J_G0036969	snRNA gene	Chr1:67238248-67238373 (-)
FVB/NJ	MGP_FVBNJ_G0036918	snRNA gene	Chr1:66422992-66423117 (-)
LP/J	MGP_LPJ_G0037016	snRNA gene	Chr1:71387352-71387477 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036928	snRNA gene	Chr1:78851465-78851590 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037766	snRNA gene	Chr1:69770486-69770611 (-)
PWK/PhJ	MGP_PWKPhJ_G0035703	snRNA gene	Chr1:66635580-66635709 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035506	snRNA gene	Chr1:69162742-69162867 (-)
WSB/EiJ	MGP_WSBEiJ_G0036210	snRNA gene	Chr1:69567688-69567813 (-)

Homology

• Gene Tree
  Gm23879
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080524 (Evidence)
• NCBI Gene
  115487680

Representative Sequences			Length	Strain/Species
genomic	115487680	NCBI Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	XR_004936853	RefSeq | MGI Sequence Detail	126	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;