Snord3b-ps1 Pseudogene Detail

Summary

• Symbol
  Snord3b-ps1
• Name
  small nucleolar RNA, C/D box 3B, pseudogene 1
• Synonyms
  Gm23927, Rnu3b-ps1

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97979
  NCBI Gene: 19852
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:4128298-4128512 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97979	pseudogene	Chr19:4128297-4128512 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038949	snoRNA gene	Chr19:908344-908558 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038948	snoRNA gene	Chr19:908343-908558 (-)
A/J	MGP_AJ_G0038944	snoRNA gene	Chr19:879485-879699 (-)
A/J	MGP_AJ_G0038943	snoRNA gene	Chr19:879484-879699 (-)
AKR/J	MGP_AKRJ_G0038879	snoRNA gene	Chr19:898352-898566 (-)
AKR/J	MGP_AKRJ_G0038878	snoRNA gene	Chr19:898351-898566 (-)
BALB/cJ	MGP_BALBcJ_G0038926	snoRNA gene	Chr19:868345-868560 (-)
BALB/cJ	MGP_BALBcJ_G0038927	snoRNA gene	Chr19:868346-868560 (-)
C3H/HeJ	MGP_C3HHeJ_G0038591	snoRNA gene	Chr19:895874-896088 (-)
C3H/HeJ	MGP_C3HHeJ_G0038590	snoRNA gene	Chr19:895873-896088 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039475	snoRNA gene	Chr19:942555-942770 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039476	snoRNA gene	Chr19:942556-942770 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0037732	snoRNA gene	Chr19:902516-902730 (-)
CAST/EiJ	MGP_CASTEiJ_G0037731	snoRNA gene	Chr19:902515-902730 (-)
CBA/J	MGP_CBAJ_G0038562	snoRNA gene	Chr19:1003486-1003700 (-)
CBA/J	MGP_CBAJ_G0038561	snoRNA gene	Chr19:1003485-1003700 (-)
DBA/2J	MGP_DBA2J_G0038751	snoRNA gene	Chr19:839048-839262 (-)
DBA/2J	MGP_DBA2J_G0038750	snoRNA gene	Chr19:837524-837739 (-)
FVB/NJ	MGP_FVBNJ_G0038702	snoRNA gene	Chr19:846736-846951 (-)
FVB/NJ	MGP_FVBNJ_G0038703	snoRNA gene	Chr19:846737-846951 (-)
LP/J	MGP_LPJ_G0038790	snoRNA gene	Chr19:901398-901613 (-)
LP/J	MGP_LPJ_G0038791	snoRNA gene	Chr19:901399-901613 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038704	snoRNA gene	Chr19:954099-954313 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038703	snoRNA gene	Chr19:954098-954313 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039577	snoRNA gene	Chr19:898826-899041 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039578	snoRNA gene	Chr19:898827-899041 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0037170	snoRNA gene	Chr19:881096-881311 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037171	snoRNA gene	Chr19:881097-881311 (-)
WSB/EiJ	MGP_WSBEiJ_G0037960	snoRNA gene	Chr19:881993-882207 (-)
WSB/EiJ	MGP_WSBEiJ_G0037959	snoRNA gene	Chr19:881992-882207 (-)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000064400 (Evidence), ENSMUSG00000104921 (Evidence)
• NCBI Gene
  19852

Representative Sequences			Length	Strain/Species
genomic	19852	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J

Molecular
Reagents

• All nucleic 3

  Genomic 2

  Other 1

Other
Accession IDs

MGD-MRK-13981, MGD-MRK-13987, MGI:5453704, MGI:6434260

References

• Summaries
  All 8
• Earliest
  J:9826 Mazan S, et al., Mouse U3-RNA-processed pseudogenes are nonrandomly integrated into genomic DNA. Implications for the process of retrogene formation. Eur J Biochem. 1989 May 15;181(3):599-605
• Latest
  J:11033 Mazan S, et al., Composition and chromosomal localization of the small multigene family encoding mouse U3B nucleolar RNA. Cytogenet Cell Genet. 1991;56(1):18-22