Rnu6-ps1 Pseudogene Detail

Summary

• Symbol
  Rnu6-ps1
• Name
  U6 small nuclear RNA, pseudogene 1
• Synonyms
  Gm24705

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97990
  NCBI Gene: 19863
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54818634-54818740 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97990	pseudogene	Chr14:54818533-54818838 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037469	snRNA gene	Chr14:48542623-48542730 (+)
A/J	MGP_AJ_G0037465	snRNA gene	Chr14:47593486-47593734 (+)
AKR/J	MGP_AKRJ_G0037403	snRNA gene	Chr14:49306598-49306705 (+)
BALB/cJ	MGP_BALBcJ_G0037450	snRNA gene	Chr14:47566552-47566659 (+)
C3H/HeJ	MGP_C3HHeJ_G0037127	snRNA gene	Chr14:49007141-49007248 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037967	snRNA gene	Chr14:51008034-51008140 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034941	snRNA gene	Chr14:46007304-46007405 (+)
CAST/EiJ	MGP_CASTEiJ_G0036301	snRNA gene	Chr14:45245738-45245845 (+)
CBA/J	MGP_CBAJ_G0037100	snRNA gene	Chr14:52517727-52517834 (+)
DBA/2J	MGP_DBA2J_G0037279	snRNA gene	Chr14:47334412-47334519 (+)
FVB/NJ	MGP_FVBNJ_G0037224	snRNA gene	Chr14:46787134-46787241 (+)
LP/J	MGP_LPJ_G0037328	snRNA gene	Chr14:49546957-49547064 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037241	snRNA gene	Chr14:51939049-51939160 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038082	snRNA gene	Chr14:48500038-48500145 (+)
PWK/PhJ	MGP_PWKPhJ_G0035995	snRNA gene	Chr14:43862665-43862772 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035786	snRNA gene	Chr14:44482622-44482729 (+)
WSB/EiJ	MGP_WSBEiJ_G0036512	snRNA gene	Chr14:48791690-48791797 (+)

Homology

• Gene Tree
  Rnu6-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000064742 (Evidence)
• NCBI Gene
  19863

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064742	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00000082808	Ensembl | MGI Sequence Detail	107	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-13998, MGI:5454482

References

• Summaries
  All 5
• Earliest
  J:6656 Ohshima Y, et al., Nucleotide sequences of mouse genomic loci including a gene or pseudogene for U6 (4.8S) nuclear RNA. Nucleic Acids Res. 1981 Oct 10;9(19):5145-58