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Rnu6-ps1 Pseudogene Detail
Summary
  • Symbol
    Rnu6-ps1
  • Name
    U6 small nuclear RNA, pseudogene 1
  • Synonyms
    Gm24705
Location &
Maps
more
  • Sequence Map
    Chr14:54818634-54818740 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    139 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_97990
 pseudogene Chr14:54818533-54818838 (+)
129S1/SvImJ MGP_129S1SvImJ_G0037469
 snRNA gene Chr14:48542623-48542730 (+)
A/J MGP_AJ_G0037465
 snRNA gene Chr14:47593486-47593734 (+)
AKR/J MGP_AKRJ_G0037403
 snRNA gene Chr14:49306598-49306705 (+)
BALB/cJ MGP_BALBcJ_G0037450
 snRNA gene Chr14:47566552-47566659 (+)
C3H/HeJ MGP_C3HHeJ_G0037127
 snRNA gene Chr14:49007141-49007248 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037967
 snRNA gene Chr14:51008034-51008140 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034941
 snRNA gene Chr14:46007304-46007405 (+)
CAST/EiJ MGP_CASTEiJ_G0036301
 snRNA gene Chr14:45245738-45245845 (+)
CBA/J MGP_CBAJ_G0037100
 snRNA gene Chr14:52517727-52517834 (+)
DBA/2J MGP_DBA2J_G0037279
 snRNA gene Chr14:47334412-47334519 (+)
FVB/NJ MGP_FVBNJ_G0037224
 snRNA gene Chr14:46787134-46787241 (+)
LP/J MGP_LPJ_G0037328
 snRNA gene Chr14:49546957-49547064 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0037241
 snRNA gene Chr14:51939049-51939160 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0038082
 snRNA gene Chr14:48500038-48500145 (+)
PWK/PhJ MGP_PWKPhJ_G0035995
 snRNA gene Chr14:43862665-43862772 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035786
 snRNA gene Chr14:44482622-44482729 (+)
WSB/EiJ MGP_WSBEiJ_G0036512
 snRNA gene Chr14:48791690-48791797 (+)



Homology
less
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064742 Ensembl Gene Model | MGI Sequence Detail 107 C57BL/6J ±  kb
transcript ENSMUST00000082808 Ensembl | MGI Sequence Detail 107 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1
Other
Accession IDs
less
MGD-MRK-13998, MGI:5454482
References
more
  • Summaries
    All 5
  • Earliest
    J:6656 Ohshima Y, et al., Nucleotide sequences of mouse genomic loci including a gene or pseudogene for U6 (4.8S) nuclear RNA. Nucleic Acids Res. 1981 Oct 10;9(19):5145-58
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory