Gm25128 Gene Detail

Summary

• Symbol
  Gm25128
• Name
  predicted gene, 25128

• Feature Type
  snoRNA gene
• IDs
  MGI:5454905
  NCBI Gene: 115488831
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:35466151-35466226 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454905	snoRNA gene	Chr17:35466151-35466226 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038895	snoRNA gene	Chr17:35398643-35398718 (+)
A/J	MGP_AJ_G0038847	snoRNA gene	Chr16:38041315-38041390 (+)
AKR/J	MGP_AKRJ_G0038825	snoRNA gene	Chr17:34697462-34697537 (+)
BALB/cJ	MGP_BALBcJ_G0038873	snoRNA gene	Chr17:34366123-34366198 (+)
C3H/HeJ	MGP_C3HHeJ_G0038537	snoRNA gene	Chr17:35102852-35102927 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039422	snoRNA gene	Chr17:36754043-36754118 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036157	snoRNA gene	Chr17:31989848-31989923 (+)
CAST/EiJ	MGP_CASTEiJ_G0037678	snoRNA gene	Chr17:35113511-35113586 (+)
CBA/J	MGP_CBAJ_G0038509	snoRNA gene	Chr17:38256028-38256103 (+)
DBA/2J	MGP_DBA2J_G0038697	snoRNA gene	Chr17:33546168-33546243 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0038737	snoRNA gene	Chr17:35727985-35728060 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038650	snoRNA gene	Chr17:37183419-37183494 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039524	snoRNA gene	Chr17:34927744-34927819 (+)
PWK/PhJ	MGP_PWKPhJ_G0037363	snoRNA gene	Chr17:32385823-32385898 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037120	snoRNA gene	Chr17:32936573-32936648 (+)
WSB/EiJ	MGP_WSBEiJ_G0037906	snoRNA gene	Chr17:35056697-35056772 (+)

Homology

• Gene Tree
  Gm25128
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm25128
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000065273 (Evidence)
• NCBI Gene
  115488831

Representative Sequences			Length	Strain/Species
genomic	115488831	NCBI Gene Model | MGI Sequence Detail	76	C57BL/6J
transcript	XR_004939750	RefSeq | MGI Sequence Detail	76	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm25128:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144328	Chr17:35465979-35466009 (+)	-157 bp
Tssr144329	Chr17:35466150-35466153 (+)	1 bp