Gm25821 Gene Detail

Summary

• Symbol
  Gm25821
• Name
  predicted gene, 25821

• Feature Type
  snoRNA gene
• IDs
  MGI:5455598
  NCBI Gene: 115485864
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:21337928-21338060 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455598	snoRNA gene	Chr12:21337928-21338060 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038619	snoRNA gene	Chr12:18841150-18841283 (+)
A/J	MGP_AJ_G0038610	snoRNA gene	Chr12:18131915-18132047 (+)
AKR/J	MGP_AKRJ_G0038546	snoRNA gene	Chr12:18966230-18966362 (+)
BALB/cJ	MGP_BALBcJ_G0038595	snoRNA gene	Chr12:18505974-18506106 (+)
C3H/HeJ	MGP_C3HHeJ_G0038258	snoRNA gene	Chr12:18863007-18863140 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039141	snoRNA gene	Chr12:19541145-19541277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035906	snoRNA gene	Chr12:17732345-17732477 (+)
CAST/EiJ	MGP_CASTEiJ_G0037403	snoRNA gene	Chr12:16132130-16132262 (+)
CBA/J	MGP_CBAJ_G0038230	snoRNA gene	Chr12:20273920-20274053 (+)
DBA/2J	MGP_DBA2J_G0038419	snoRNA gene	Chr12:18164269-18164402 (+)
FVB/NJ	MGP_FVBNJ_G0038371	snoRNA gene	Chr12:18065501-18065634 (+)
LP/J	MGP_LPJ_G0038459	snoRNA gene	Chr12:18940822-18940955 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038371	snoRNA gene	Chr12:20097581-20097714 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039243	snoRNA gene	Chr12:18543665-18543798 (+)
PWK/PhJ	MGP_PWKPhJ_G0037087	snoRNA gene	Chr12:15433642-15433774 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036845	snoRNA gene	Chr12:15832088-15832220 (+)
WSB/EiJ	MGP_WSBEiJ_G0037633	snoRNA gene	Chr12:18726416-18726549 (+)

Homology

• Gene Tree
  Gm25821
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000070166 (Evidence)
• NCBI Gene
  115485864

Representative Sequences			Length	Strain/Species
genomic	115485864	NCBI Gene Model | MGI Sequence Detail	133	C57BL/6J
transcript	XR_004937852	RefSeq | MGI Sequence Detail	133	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25821:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3809	Chr12:21337511-21337515 (+)	-415 bp