Gm26533 Gene Detail

Summary

• Symbol
  Gm26533
• Name
  predicted gene, 26533

• Feature Type
  lncRNA gene
• IDs
  MGI:5477027
  NCBI Gene: 115488895
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:31914279-31922098 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477027	lncRNA gene	Chr18:31914279-31922133 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005774	lincRNA gene	Chr18:29898219-29906060 (-)
A/J	MGP_AJ_G0005763	lincRNA gene	Chr18:28905964-28913773 (-)
AKR/J	MGP_AKRJ_G0005740	lincRNA gene	Chr18:29707466-29715272 (-)
BALB/cJ	MGP_BALBcJ_G0005742	lincRNA gene	Chr18:29000860-29008613 (-)
C3H/HeJ	MGP_C3HHeJ_G0005690	lincRNA gene	Chr18:29745275-29753112 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005903	lincRNA gene	Chr18:30961231-30969140 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005632	lincRNA gene	Chr18:29636043-29645084 (-)
CBA/J	MGP_CBAJ_G0005677	lincRNA gene	Chr18:31918080-31929173 (-)
DBA/2J	MGP_DBA2J_G0005695	lincRNA gene	Chr18:28580676-28588508 (-)
FVB/NJ	MGP_FVBNJ_G0005722	lincRNA gene	Chr18:28284922-28292739 (-)
LP/J	MGP_LPJ_G0005776	lincRNA gene	Chr18:29979844-29987605 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005708	lincRNA gene	Chr18:33277074-33285640 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005902	lincRNA gene	Chr18:29571834-29580416 (-)
PWK/PhJ	MGP_PWKPhJ_G0005576	lincRNA gene	Chr18:28733696-28741735 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005492	lincRNA gene	Chr18:29788300-29799332 (-)
WSB/EiJ	MGP_WSBEiJ_G0005683	lincRNA gene	Chr18:29472200-29480810 (-)

Homology

• Gene Tree
  Gm26533
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097748 (Evidence)
• NCBI Gene
  115488895

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097748	Ensembl Gene Model | MGI Sequence Detail	7820	C57BL/6J
transcript	ENSMUST00000180550	Ensembl | MGI Sequence Detail	1790	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9