Gm26542 Gene Detail

Summary

• Symbol
  Gm26542
• Name
  predicted gene, 26542

• Feature Type
  lncRNA gene
• IDs
  MGI:5477036
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:50127780-50179666 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1276 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477036	lncRNA gene	Chr11:50127780-50179666 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005223	lincRNA gene	Chr11:49405620-49462540 (+)
A/J	MGP_AJ_G0005208	lincRNA gene	Chr11:47509548-47563046 (+)
AKR/J	MGP_AKRJ_G0005186	lincRNA gene	Chr11:49021439-49077819 (+)
BALB/cJ	MGP_BALBcJ_G0005188	lincRNA gene	Chr11:47788912-47840938 (+)
C3H/HeJ	MGP_C3HHeJ_G0005137	lincRNA gene	Chr11:49027623-49081094 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005340	lincRNA gene	Chr11:50868431-50922793 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004735	lincRNA gene	Chr11:45129467-45187067 (+)
CAST/EiJ	MGP_CASTEiJ_G0005084	lincRNA gene	Chr11:48999632-49057170 (+)
CBA/J	MGP_CBAJ_G0005127	lincRNA gene	Chr11:53225948-53281055 (+)
DBA/2J	MGP_DBA2J_G0005144	lincRNA gene	Chr11:47308832-47360779 (+)
FVB/NJ	MGP_FVBNJ_G0005169	lincRNA gene	Chr11:46936709-46990449 (+)
LP/J	MGP_LPJ_G0005225	lincRNA gene	Chr11:49740527-49803976 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005152	lincRNA gene	Chr11:54755860-54809462 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005343	lincRNA gene	Chr11:49130771-49183854 (+)
PWK/PhJ	MGP_PWKPhJ_G0005035	lincRNA gene	Chr11:47712901-47766337 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004957	lincRNA gene	Chr11:48822269-48881048 (+)
WSB/EiJ	MGP_WSBEiJ_G0005132	lincRNA gene	Chr11:48769663-48822158 (+)

Homology

• Gene Tree
  Gm26542
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  1
• Gene trapped
  10
• Genomic Mutations
  1 involving Gm26542
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097887 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097887	Ensembl Gene Model | MGI Sequence Detail	51887	C57BL/6J
transcript	ENSMUST00000180443	Ensembl | MGI Sequence Detail	1235	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101237	Chr11:50127677-50127697 (+)	-93 bp
Tssr101238	Chr11:50127714-50127744 (+)	-51 bp
Tssr101239	Chr11:50127829-50127841 (+)	55 bp
Tssr101240	Chr11:50143265-50143281 (+)	15,493 bp