Gm26560 Gene Detail

Summary

• Symbol
  Gm26560
• Name
  predicted gene, 26560

• Feature Type
  lncRNA gene
• IDs
  MGI:5477054
  NCBI Gene: 102637436
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:38474676-38478240 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477054	lncRNA gene	Chr5:38474673-38501721 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004067	antisense lncRNA gene	Chr5:36726051-36729615 (-)
A/J	MGP_AJ_G0004048	antisense lncRNA gene	Chr5:35501414-35504978 (-)
AKR/J	MGP_AKRJ_G0004026	antisense lncRNA gene	Chr5:36833526-36837090 (-)
BALB/cJ	MGP_BALBcJ_G0004034	antisense lncRNA gene	Chr5:35990582-35994146 (-)
C3H/HeJ	MGP_C3HHeJ_G0003980	antisense lncRNA gene	Chr5:36822388-36825952 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004183	antisense lncRNA gene	Chr5:38668851-38672415 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003662	antisense lncRNA gene	Chr5:33174360-33177894 (-)
CAST/EiJ	MGP_CASTEiJ_G0003944	antisense lncRNA gene	Chr5:35993018-35996577 (-)
CBA/J	MGP_CBAJ_G0003974	antisense lncRNA gene	Chr5:39585652-39589216 (-)
DBA/2J	MGP_DBA2J_G0003989	antisense lncRNA gene	Chr5:35622277-35625841 (-)
FVB/NJ	MGP_FVBNJ_G0004008	antisense lncRNA gene	Chr5:35105092-35108656 (-)
LP/J	MGP_LPJ_G0004069	antisense lncRNA gene	Chr5:37175859-37179423 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003997	antisense lncRNA gene	Chr5:40305023-40308587 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004178	antisense lncRNA gene	Chr5:36321372-36324936 (-)
PWK/PhJ	MGP_PWKPhJ_G0003897	antisense lncRNA gene	Chr5:34789099-34792659 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003842	antisense lncRNA gene	Chr5:35770661-35774219 (-)
WSB/EiJ	MGP_WSBEiJ_G0003979	antisense lncRNA gene	Chr5:36401512-36405076 (-)

Homology

• Gene Tree
  Gm26560
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm26560
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  9

• Ensembl
  ENSMUSG00000097029 (Evidence)
• NCBI Gene
  102637436

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097029	Ensembl Gene Model | MGI Sequence Detail	3565	C57BL/6J
transcript	ENSMUST00000181240	Ensembl | MGI Sequence Detail	2619	Not Applicable

References

• Summaries
  All 21

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707