Gm26685 Gene Detail

Summary

• Symbol
  Gm26685
• Name
  predicted gene, 26685

• Feature Type
  lncRNA gene
• IDs
  MGI:5477179
  NCBI Gene: 102635083
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:164330878-164342451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  408 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477179	lncRNA gene	Chr1:164330876-164342451 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005020	lincRNA gene	Chr1:169955606-169967165 (+)
A/J	MGP_AJ_G0005002	lincRNA gene	Chr1:163017140-163028711 (+)
AKR/J	MGP_AKRJ_G0004980	lincRNA gene	Chr1:167961302-167972895 (+)
BALB/cJ	MGP_BALBcJ_G0004984	lincRNA gene	Chr1:163515852-163527485 (+)
C3H/HeJ	MGP_C3HHeJ_G0004932	lincRNA gene	Chr1:168153384-168164957 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005134	lincRNA gene	Chr1:175640158-175651795 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004545	lincRNA gene	Chr1:154979222-154991975 (+)
CAST/EiJ	MGP_CASTEiJ_G0004880	lincRNA gene	Chr1:167796697-167806961 (+)
CBA/J	MGP_CBAJ_G0004923	lincRNA gene	Chr1:181901060-181912641 (+)
DBA/2J	MGP_DBA2J_G0004942	lincRNA gene	Chr1:161903147-161914649 (+)
FVB/NJ	MGP_FVBNJ_G0004963	lincRNA gene	Chr1:160368154-160380271 (+)
LP/J	MGP_LPJ_G0005020	lincRNA gene	Chr1:171035670-171047243 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004947	lincRNA gene	Chr1:189409434-189420999 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005139	lincRNA gene	Chr1:167801517-167813102 (+)
PWK/PhJ	MGP_PWKPhJ_G0004831	lincRNA gene	Chr1:161095551-161107222 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004758	lincRNA gene	Chr1:166670979-166682483 (+)
WSB/EiJ	MGP_WSBEiJ_G0004926	lincRNA gene	Chr1:167959024-167970669 (+)

Homology

• Gene Tree
  Gm26685
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  2
• Gene trapped
  10
• Genomic Mutations
  2 involving Gm26685
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097281 (Evidence)
• NCBI Gene
  102635083

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097281	Ensembl Gene Model | MGI Sequence Detail	11574	C57BL/6J
transcript	ENSMUST00000181831	Ensembl | MGI Sequence Detail	2023	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26685:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9792	Chr1:164330875-164330899 (+)	9 bp