Gm26871 Gene Detail

Summary

• Symbol
  Gm26871
• Name
  predicted gene, 26871

• Feature Type
  lncRNA gene
• IDs
  MGI:5477365
  NCBI Gene: 102634933
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr3:118223745-118328662 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3341 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477365	lncRNA gene	Chr3:118223583-118337636 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015521	unclassified non-coding RNA gene	Chr3:120454917-120565799 (+)
A/J	MGP_AJ_G0015498	unclassified non-coding RNA gene	Chr3:116500120-116601931 (+)
AKR/J	MGP_AKRJ_G0015462	unclassified non-coding RNA gene	Chr3:119426349-119531808 (+)
BALB/cJ	MGP_BALBcJ_G0015460	unclassified non-coding RNA gene	Chr3:116323283-116426079 (+)
C3H/HeJ	MGP_C3HHeJ_G0015283	unclassified non-coding RNA gene	Chr3:119840131-119949426 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015914	unclassified non-coding RNA gene	Chr3:124839344-124953937 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013649	unclassified non-coding RNA gene	Chr3:112065803-112165041 (+)
CAST/EiJ	MGP_CASTEiJ_G0014837	unclassified non-coding RNA gene	Chr3:119155513-119263738 (+)
CBA/J	MGP_CBAJ_G0015264	unclassified non-coding RNA gene	Chr3:129140018-129239873 (+)
DBA/2J	MGP_DBA2J_G0015358	unclassified non-coding RNA gene	Chr3:115692994-115793685 (+)
FVB/NJ	MGP_FVBNJ_G0015365	unclassified non-coding RNA gene	Chr3:113311985-113412955 (+)
LP/J	MGP_LPJ_G0015437	unclassified non-coding RNA gene	Chr3:122015890-122125575 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015389	unclassified non-coding RNA gene	Chr3:136592037-136731711 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015955	unclassified non-coding RNA gene	Chr3:118982307-119089762 (+)
PWK/PhJ	MGP_PWKPhJ_G0014623	unclassified non-coding RNA gene	Chr3:115334632-115435694 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014411	unclassified non-coding RNA gene	Chr3:117036279-117137233 (+)
WSB/EiJ	MGP_WSBEiJ_G0014943	unclassified non-coding RNA gene	Chr3:119695670-119809692 (+)

Homology

• Gene Tree
  Gm26871
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm26871
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  13

• Ensembl
  ENSMUSG00000097311 (Evidence)
• NCBI Gene
  102634933

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097311	Ensembl Gene Model | MGI Sequence Detail	104918	C57BL/6J
transcript	ENSMUST00000193265	Ensembl | MGI Sequence Detail	4131	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm26871:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31405	Chr3:118223690-118223723 (+)	-38 bp
Tssr31406	Chr3:118223948-118224017 (+)	238 bp
Tssr31407	Chr3:118224065-118224126 (+)	351 bp
Tssr31408	Chr3:118225068-118225114 (+)	1,346 bp
Tssr31409	Chr3:118225142-118225168 (+)	1,410 bp
Tssr31410	Chr3:118225175-118225187 (+)	1,436 bp
Tssr31412	Chr3:118249968-118249974 (+)	26,226 bp
Tssr31413	Chr3:118315684-118315688 (+)	91,941 bp