Gm26901 Gene Detail

Summary

• Symbol
  Gm26901
• Name
  predicted gene, 26901

• Feature Type
  lncRNA gene
• IDs
  MGI:5477395
  NCBI Gene: 102632124
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:7419630-7468093 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1785 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477395	lncRNA gene	Chr1:7384861-7469430 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004769	lincRNA gene	Chr1:4619004-4653307 (-)
A/J	MGP_AJ_G0004750	lincRNA gene	Chr1:4552914-4556346 (-)
AKR/J	MGP_AKRJ_G0004729	lincRNA gene	Chr1:4527397-4530033 (-)
BALB/cJ	MGP_BALBcJ_G0004732	lincRNA gene	Chr1:4409366-4412986 (-)
C3H/HeJ	MGP_C3HHeJ_G0004680	lincRNA gene	Chr1:4514763-4520229 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004882	lincRNA gene	Chr1:4753301-4778175 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004637	lincRNA gene	Chr1:4728108-4730559 (-)
CBA/J	MGP_CBAJ_G0004673	lincRNA gene	Chr1:4913492-4916128 (-)
DBA/2J	MGP_DBA2J_G0004691	lincRNA gene	Chr1:4359369-4362037 (-)
FVB/NJ	MGP_FVBNJ_G0004711	lincRNA gene	Chr1:4296291-4298974 (-)
LP/J	MGP_LPJ_G0004770	lincRNA gene	Chr1:4705787-4752196 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004696	lincRNA gene	Chr1:5240048-5279467 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004886	lincRNA gene	Chr1:4485126-4507969 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm26901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  12

• Ensembl
  ENSMUSG00000097797 (Evidence)
• NCBI Gene
  102632124

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097797	Ensembl Gene Model | MGI Sequence Detail	48464	C57BL/6J
transcript	ENSMUST00000193428	Ensembl | MGI Sequence Detail	2703	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26901:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10914	Chr1:7467296-7467300 (-)	795 bp