Gm27001 Pseudogene Detail

Summary

• Symbol
  Gm27001
• Name
  predicted gene, 27001

• Feature Type
  pseudogene
• IDs
  MGI:5504116
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:60448971-60449906 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504116	pseudogene	Chr16:60448971-60449906 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011297	pseudogene	Chr16:59928225-59929160 (+)
A/J	MGP_AJ_G0011282	pseudogene	Chr16:57412937-57413872 (+)
AKR/J	MGP_AKRJ_G0011243	pseudogene	Chr16:59196753-59197688 (+)
BALB/cJ	MGP_BALBcJ_G0011256	pseudogene	Chr16:57564301-57565236 (+)
C3H/HeJ	MGP_C3HHeJ_G0011148	pseudogene	Chr16:59451579-59452514 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011542	pseudogene	Chr16:61665135-61666070 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010123	pseudogene	Chr16:56793644-56794547 (+)
CAST/EiJ	MGP_CASTEiJ_G0010972	pseudogene	Chr16:59722427-59723373 (+)
CBA/J	MGP_CBAJ_G0011126	pseudogene	Chr16:64157792-64158727 (+)
DBA/2J	MGP_DBA2J_G0011175	pseudogene	Chr16:57114612-57115547 (+)
FVB/NJ	MGP_FVBNJ_G0011177	pseudogene	Chr16:56822130-56823065 (+)
LP/J	MGP_LPJ_G0011268	pseudogene	Chr16:59772337-59773272 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011173	pseudogene	Chr16:64720559-64721494 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011525	pseudogene	Chr16:59293984-59294919 (+)
PWK/PhJ	MGP_PWKPhJ_G0010840	pseudogene	Chr16:57356973-57357919 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010667	pseudogene	Chr16:59048361-59049295 (+)
WSB/EiJ	MGP_WSBEiJ_G0011012	pseudogene	Chr16:59349116-59350051 (+)

Homology

• Gene Tree
  Gm27001
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097963 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097963	Ensembl Gene Model | MGI Sequence Detail	936	C57BL/6J
transcript	ENSMUST00000182252	Ensembl | MGI Sequence Detail	936	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;