Gm27021 Gene Detail

Summary

• Symbol
  Gm27021
• Name
  predicted gene, 27021

• Feature Type
  protein coding gene
• IDs
  MGI:5504136
  NCBI Gene: 105734727
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:121335525-121394818 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1554 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504136	protein coding gene	Chr8:121335339-121394881 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0034203	protein coding gene	Chr8:124043246-124108357 (-)
A/J	MGP_AJ_G0034183	protein coding gene	Chr8:118892370-118953193 (-)
AKR/J	MGP_AKRJ_G0034110	protein coding gene	Chr8:122347166-122414645 (-)
BALB/cJ	MGP_BALBcJ_G0034177	protein coding gene	Chr8:119106967-119167260 (-)
C3H/HeJ	MGP_C3HHeJ_G0033888	protein coding gene	Chr8:123086437-123150397 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0034697	protein coding gene	Chr8:128168892-128235311 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031639	protein coding gene	Chr8:111766479-111829127 (-)
CAST/EiJ	MGP_CASTEiJ_G0033215	protein coding gene	Chr8:123080792-123146089 (-)
CBA/J	MGP_CBAJ_G0033861	protein coding gene	Chr8:132853888-132921924 (-)
DBA/2J	MGP_DBA2J_G0034017	protein coding gene	Chr8:118109953-118170527 (-)
FVB/NJ	MGP_FVBNJ_G0033960	protein coding gene	Chr8:117182895-117245038 (-)
LP/J	MGP_LPJ_G0034106	protein coding gene	Chr8:124162063-124226980 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034007	protein coding gene	Chr8:135218145-135284323 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034715	protein coding gene	Chr8:122520467-122584909 (-)
PWK/PhJ	MGP_PWKPhJ_G0032917	protein coding gene	Chr8:117893214-117954948 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0032757	protein coding gene	Chr8:121222805-121288948 (-)
WSB/EiJ	MGP_WSBEiJ_G0033331	protein coding gene	Chr8:123255463-123324446 (-)

Homology

• Gene Tree
  Gm27021
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS85621.1

• Ensembl
  ENSMUSG00000097919 (Evidence)
• NCBI Gene
  105734727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097919	Ensembl Gene Model | MGI Sequence Detail	59294	C57BL/6J
transcript	ENSMUST00000181333	Ensembl | MGI Sequence Detail	758	Not Applicable
polypeptide	ENSMUSP00000137785	Ensembl | MGI Sequence Detail	156	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR005366 ER membrane protein complex subunit 8/9
  IPR027864 Protein of unknown function DUF4597

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Gm27021:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83211	Chr8:121394797-121394837 (-)	1 bp
Tssr83210	Chr8:121394769-121394795 (-)	36 bp